Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RPL18.6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34480 345 / 1e-123 Ribosomal protein L18ae/LX family protein (.1) AT3G14600 343 / 1e-122 Ribosomal protein L18ae/LX family protein (.1) AT1G29965 335 / 2e-119 Ribosomal protein L18ae/LX family protein (.1) AT1G29970 329 / 4e-115 RPL18AA 60S ribosomal protein L18A-1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G063400 [exp] 371 / 7e-134 AT2G34480 345 / 1e-123 Ribosomal protein L18ae/LX family protein (.1) Potri.011G072400 [exp] 367 / 5e-132 AT2G34480 349 / 4e-125 Ribosomal protein L18ae/LX family protein (.1) Potri.002G057600 [exp] 359 / 4e-129 AT2G34480 342 / 3e-122 Ribosomal protein L18ae/LX family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023457 [exp] 350 / 1e-125 AT2G34480 337 / 2e-120 Ribosomal protein L18ae/LX family protein (.1) Lus10019881 [exp] 348 / 9e-125 AT2G34480 337 / 4e-120 Ribosomal protein L18ae/LX family protein (.1) Lus10023454 [exp] 348 / 9e-125 AT2G34480 337 / 4e-120 Ribosomal protein L18ae/LX family protein (.1) Lus10014035 [exp] 351 / 8e-123 AT2G34480 338 / 2e-117 Ribosomal protein L18ae/LX family protein (.1) Lus10040332 [exp] 297 / 8e-105 AT2G34480 290 / 4e-102 Ribosomal protein L18ae/LX family protein (.1) Lus10023456 [exp] 151 / 4e-48 AT2G34480 147 / 1e-46 Ribosomal protein L18ae/LX family protein (.1) Lus10023453 [exp] 116 / 2e-34 AT2G34480 112 / 4e-33 Ribosomal protein L18ae/LX family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01775 [poplar] [flax] Ribosomal_L18A Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
Representative CDS sequence Show only first row Show all	>Potri.004G063300.2 pacid=42794142 polypeptide=Potri.004G063300.2.p locus=Potri.004G063300 ID=Potri.004G063300.2.v4.1 annot-version=v4.1 ATGGTTACTTTCAGGTTTCACCAGTACCAAGTGGTCGGGAGAGCACTTCCAACAGGGAGTGATGAGCATCCTAAGATCTACCGGATGAAGCTTTGGGCCA CTAATGAGGTCCGTGCCAAATCCAAGTTTTGGTACTTCTTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGACAGGTTCTTGCAATCAATGAGATTTT TGAGAAGAATCCTACCAAGATCAAGAATTATGGAATATGGCTGCGATACCAGAGCCGAACTGGCTATCACAACATGTACAAGGAATACCGCGACACAACT CTTAATGGTGCTGTTGAACAAATGTACACTGAGATGGCATCTCGCCATAGGGTGAGGTTTCCATGCATCCAAATCATTAAGACAGCTACCATCCCAGCCA AGCTTTGCAAGAGAGAGAGTACCAAGCAGTTTCACAACTCCAAAATCAAATTTCCATTGGTGTTCAAGAAGGTTAGACCCCCATCCAGGAAGCTCAAGAC AACATACAAGGCTTCCAGGCCCAACCTGTTTATGTGA
AA sequence Show only first row Show all	>Potri.004G063300.2 pacid=42794142 polypeptide=Potri.004G063300.2.p locus=Potri.004G063300 ID=Potri.004G063300.2.v4.1 annot-version=v4.1 MVTFRFHQYQVVGRALPTGSDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTT LNGAVEQMYTEMASRHRVRFPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34480			Ribosomal protein L18ae/LX fam...		Potri.004G063300 [exp]	0	1	RPL18.6
AT2G34480			Ribosomal protein L18ae/LX fam...		Potri.004G063400 [exp]	1.00	0.9416
AT3G13580			Ribosomal protein L30/L7 famil...		Potri.008G008000 [exp]	1.73	0.8382	RPL7.3
AT5G59240			Ribosomal protein S8e family p...		Potri.001G360500 [exp]	2.00	0.8221
AT4G36130			Ribosomal protein L2 family (....		Potri.007G013000 [exp]	2.44	0.8714
AT5G20180			Ribosomal protein L36 (.1.2)		Potri.006G069000 [exp]	4.69	0.7221
AT5G13780			Acyl-CoA N-acyltransferases (N...		Potri.001G261800 [exp]	7.34	0.7673
AT2G41600			Mitochondrial glycoprotein fam...		Potri.006G046350 [exp]	8.83	0.7459
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Potri.017G060800 [exp]	9.21	0.7309
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Potri.008G060000 [exp]	10.00	0.7893	Pt-EIF3.1
AT5G60390			GTP binding Elongation factor ...		Potri.010G218800 [exp]	10.24	0.7730

Compare expression of checked genes

Potri.004G063300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.