Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RKF1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29750 1182 / 0 RKF1 receptor-like kinase in flowers 1 (.1.2) AT3G14840 869 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 863 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29740 863 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 857 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53420 831 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 831 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53440 828 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 800 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56145 613 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G072566 [exp] 1727 / 0 AT1G29750 1210 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.011G072300 [exp] 1104 / 0 AT1G29750 1024 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.004G063200 [exp] 1091 / 0 AT1G29750 1019 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.001G385200 [exp] 956 / 0 AT3G14840 1171 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G072741 [exp] 950 / 0 AT1G29740 1014 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073700 [exp] 948 / 0 AT1G29740 1012 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072966 [exp] 948 / 0 AT1G29740 1006 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072866 [exp] 944 / 0 AT1G29740 1024 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G075400 [exp] 935 / 0 AT1G29740 1012 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015239 [exp] 1383 / 0 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10005418 [exp] 915 / 0 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10031374 [exp] 863 / 0 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005550 [exp] 803 / 0 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 737 / 0 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 734 / 0 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010951 [exp] 713 / 0 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10042505 [exp] 692 / 0 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 641 / 0 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10026207 [exp] 329 / 3e-103 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.004G063500.1 pacid=42796150 polypeptide=Potri.004G063500.1.p locus=Potri.004G063500 ID=Potri.004G063500.1.v4.1 annot-version=v4.1 ATGCTTGCTGGGACGTTCTTCGTTTTCTTGATTGTTAGTCTTGCTAGCTGCTTTTGGTTGCCGACGTTTCCTGAGGCAAAGCTGGTCCAAGAAGAAGTTG ATGCTCTTGAAGAAATTGCACGAACATTGGGTTCTAAATACTGGAAGTTCAATGCTGATACTTGCGAAATTGAAATGGCTGGAGTAACTCAAGTCCCACC AAAGAACGCTGAGCAAAGGATAGATTGTGAATGCAACAATGGGAACAATACTGATTGTCACGTCACCAGAATGGAGCTAAAACGTTATAACCTTCCCGGA GTGCTTCCAACTCAACTTGTTAAGCTTCCTCGTCTCCAAGTAGTTGATTTTGCTTACAACTACCTCAATGGTACTCTGCCACGTGAATGGGCTTCAATGC AGTTAACTTCAATAAGTGTTCTCGTAAACCGTTTGTCAGGGGAGATTCCAAAGGAACTGGGAAATATCACCACTCTCACCACCTTGTCCCTCGAAGCAAA CCAATTTTATGGCACAATTCCCCCTGACCTCGGAAAACTGATCAACTTGCAGGCATTGGGGCTGTCTTCCAATCATTTGTCTGGAAACTTGCCAGTGTCT TTTGCTGGACTAATAAATCTAACAGATTTTAGGATAAACGATAACAACTTCAGTGGAACCATTCCTATCTTCATACAGAATTGGAAAAAGCTTAAAAGAT TAGAAATGCATGCAACTGGCCTGGAGGGACCCATTCCATCGAACATTTCTCTTTTGAATATTTTAGCTGAGTTGAGAATTAGTGATCTAAATGGACCAAC TCAGGGTTTCCCTATGCTCAGCAACATGACAGGCATGATCAAATTGACTCTGAGGAACTGTAACATTTCTGGGAAGCTCCCTGCATACCTTTGGACAATG AAGAGTTTGGAAGCATTGGATGTCAGTTTCAACAAGTTGGTTGGAAAAATTCCAGACACCATAACTGCAGATCGCCTGCGATTCGTCTTTTTAACTGGCA ACTTGTTAAGTGGAGATGTACCAGATTCAATCTTGAAGGACGGGAGCAATGTTGATTTGTCATATAATAACTTTGAATTGCAAGGCCCTGAGCAACCTGC TTGTCAAGAAAACATGAATTTAAACCTGAACTTGTTCCGTAGCTCTTCAATGGGAAACAGATCAAGGAGAATTCTTCCATGCAAGGGGACTTTCAGCTGC CCTAAATATTCAAATTGTTTACATGTTAACAGTGGTGGAAAGGATGTAATTATCAAGGAAAATAAAACAACCTTTTCATATGAAGGAGATGGACAAGAAG AAGGTGGCGCAGCTAAATATTTTGTAAATGAGCAAAGTTTCTGGGGGTTTAGTAGCTCTGGAGACTTCATGGATGATAATGATTACCAAAATACTCGCTA TACTGTATCTATGCAATCATCAACCCTCCCTGAATTATACTCGACAGCTCGCATATCCCCAATTTCTCTTACCTATTTCCATTATTGCTTAGAAAATGGG AACTACACAGTAAACCTTCACTTTGCTGAGATACAATTTACTAATGACCTGACGTATAAGAGCTTAGGCAGGCGTATCTTTGACATTTATGTTCAGGAAA TATTGGTTTGGGAGAAATTCAATATTGAAGATCAGGTTGGCAGTGCTGAAAAGCCTTTAGTGAAACAAGTATTGAATGTCAGTGTGACTAATAATATGTT GGAGATCAGATTCTATTTTGCCGGGAAAGGGACGACAAGGACTCCTGATAGGGGAGTCTATGGTCCCATCATATCAGGCATCTCTGTGTTTTCTGATTTG AAACCTTGTTCAAGCGGGAAAAAGAAGGGAACTGTTTATGCGGTTGCTGGAGCTGTTGTAGCATCATGTCTTATTGCCATTATACTAGGAATCCTTTGGT GGAAAGACTACTTGCCAGGAAAATGGTGCCGGAAAAAAGATGCTGAAGGACTTAATTTTCCAAATGGAACATTTTCTCTGAAACAAATTAGAGCTGCTAC TGATGACTTTGATCCTTCTAACAAGATTGGAGAAGGTGGTTTTGGTCCTGTATACAAGGGTCAATTACCAGATGGTACTGTAATAGCGGTGAAGCAACTT TCATCAAAATCAAGGCAAGGAAATCGCGAATTCTTAAATGAGATGGGCATCATTTCTTGCTTGCAGCATCCGAATCTTGTGAAGCTGCATGGATGTTGTA TTGAAAGTGACCAGCTATTATTGGTTTACGAGTACATGGAAAATAATAGCCTTGCACGAGCTCTATTCGGTCATGAAATCAACCAGCCTAACCTGGACTG GCCTTCAAGGCTTAAGATCTGTATTGGGATAGCTAGAGGTCTAGCTTTTCTCCATGAAGAATCAAGATTTAAGATTGTTCACAGAGACATTAAAGCTACA AATGTGCTACTTGATGGGGATCTGAATGCTAAAATATCCGATTTTGGATTGGCTAGGCTTGATGAAGAAGAGAAGAGCCACATCAGCACCCGAGTAGCTG GAACCATAGGATATATGGCACCAGAATATGCACTGTGGGGTTACTTGACCTACAAGGCAGATGTTTACAGTTTTGGGGTTGTGGCTTTGGAAATTGTTAG TGGGAAGAACAACAATAACTATATGCCAAGCGACAACAATTGTGTTTGTCTCTTAGATTGGGCCTGCCATTTGCAACAAAGTGGGAGTTTTATGGAGCTT GTTGATGAGACGTTAAAATCTGAAGTTAACATGAAAGAAGCAGAAATTATGGTTAAGGTAGCTCTCTTGTGTACAAATGCATCCCCAACACTTAGGCCTA CAATGTCGGAGGCAGTGGGCATGCTTGAAGGACGAATGGCTGTTCCTGACACAGTTCCAGTACTTTCATCTACCGATGATTTGAGGTTCAAAGCCATGAG AGAACTCCGTCAGCATGAGCAAAGACATAGTTTCCGTGGGAGCCAAACACAAAGGCCAAACCCTGTTCAAATGTTTAGCTCTTCGTCTATATCTGAGAAC ACCAGTTACGAGATAAGCTCAGAACCAAAACTCTAA
AA sequence Show only first row Show all	>Potri.004G063500.1 pacid=42796150 polypeptide=Potri.004G063500.1.p locus=Potri.004G063500 ID=Potri.004G063500.1.v4.1 annot-version=v4.1 MLAGTFFVFLIVSLASCFWLPTFPEAKLVQEEVDALEEIARTLGSKYWKFNADTCEIEMAGVTQVPPKNAEQRIDCECNNGNNTDCHVTRMELKRYNLPG VLPTQLVKLPRLQVVDFAYNYLNGTLPREWASMQLTSISVLVNRLSGEIPKELGNITTLTTLSLEANQFYGTIPPDLGKLINLQALGLSSNHLSGNLPVS FAGLINLTDFRINDNNFSGTIPIFIQNWKKLKRLEMHATGLEGPIPSNISLLNILAELRISDLNGPTQGFPMLSNMTGMIKLTLRNCNISGKLPAYLWTM KSLEALDVSFNKLVGKIPDTITADRLRFVFLTGNLLSGDVPDSILKDGSNVDLSYNNFELQGPEQPACQENMNLNLNLFRSSSMGNRSRRILPCKGTFSC PKYSNCLHVNSGGKDVIIKENKTTFSYEGDGQEEGGAAKYFVNEQSFWGFSSSGDFMDDNDYQNTRYTVSMQSSTLPELYSTARISPISLTYFHYCLENG NYTVNLHFAEIQFTNDLTYKSLGRRIFDIYVQEILVWEKFNIEDQVGSAEKPLVKQVLNVSVTNNMLEIRFYFAGKGTTRTPDRGVYGPIISGISVFSDL KPCSSGKKKGTVYAVAGAVVASCLIAIILGILWWKDYLPGKWCRKKDAEGLNFPNGTFSLKQIRAATDDFDPSNKIGEGGFGPVYKGQLPDGTVIAVKQL SSKSRQGNREFLNEMGIISCLQHPNLVKLHGCCIESDQLLLVYEYMENNSLARALFGHEINQPNLDWPSRLKICIGIARGLAFLHEESRFKIVHRDIKAT NVLLDGDLNAKISDFGLARLDEEEKSHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVSGKNNNNYMPSDNNCVCLLDWACHLQQSGSFMEL VDETLKSEVNMKEAEIMVKVALLCTNASPTLRPTMSEAVGMLEGRMAVPDTVPVLSSTDDLRFKAMRELRQHEQRHSFRGSQTQRPNPVQMFSSSSISEN TSYEISSEPKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.004G063500 [exp]	0	1	RKF1.1
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Potri.011G020900 [exp]	1.00	0.8560	ACO7,Pt-ACO1.3
AT4G16563			Eukaryotic aspartyl protease f...		Potri.001G158600 [exp]	1.41	0.8471
					Potri.012G129400 [exp]	2.23	0.8009
AT1G65790		ARK1	receptor kinase 1 (.1)		Potri.004G024316 [exp]	3.46	0.8132
AT1G53440			Leucine-rich repeat transmembr...		Potri.016G061500 [exp]	5.47	0.7688
AT5G36930			Disease resistance protein (TI...		Potri.010G231200 [exp]	6.92	0.7590
					Potri.008G045467 [exp]	6.92	0.7396
AT3G18670			Ankyrin repeat family protein ...		Potri.011G016300 [exp]	7.48	0.7741
AT1G69050			unknown protein		Potri.010G138700 [exp]	7.54	0.7487
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Potri.005G089800 [exp]	7.74	0.7267

Compare expression of checked genes

Potri.004G063500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.