Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59740 417 / 5e-139 Major facilitator superfamily protein (.1) AT1G69850 411 / 7e-137 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT1G27040 399 / 1e-132 Major facilitator superfamily protein (.1.2) AT1G33440 395 / 1e-130 Major facilitator superfamily protein (.1) AT1G12110 355 / 3e-115 CHL1-1, CHL1, B-1, ATNRT1, NRT1.1 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) AT3G54140 352 / 4e-114 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G62730 345 / 3e-111 Major facilitator superfamily protein (.1) AT2G02040 343 / 1e-110 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT5G01180 340 / 9e-110 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G26690 339 / 4e-109 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036200 [exp] 472 / 1e-160 AT1G27040 428 / 6e-144 Major facilitator superfamily protein (.1.2) Potri.002G129500 [exp] 466 / 3e-158 AT1G27040 456 / 5e-155 Major facilitator superfamily protein (.1.2) Potri.004G229000 [exp] 427 / 5e-143 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.010G034300 [exp] 418 / 9e-140 AT1G69850 781 / 0.0 nitrate transporter 1:2 (.1) Potri.003G000800 [exp] 418 / 2e-139 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1) Potri.012G070700 [exp] 400 / 1e-132 AT1G69850 686 / 0.0 nitrate transporter 1:2 (.1) Potri.001G272900 [exp] 396 / 2e-131 AT1G59740 407 / 1e-135 Major facilitator superfamily protein (.1) Potri.005G001400 [exp] 397 / 4e-131 AT1G59740 372 / 2e-121 Major facilitator superfamily protein (.1) Potri.019G067500 [exp] 395 / 3e-130 AT1G33440 734 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015240 [exp] 763 / 0 AT1G69850 469 / 1e-159 nitrate transporter 1:2 (.1) Lus10005417 [exp] 728 / 0 AT1G69850 446 / 1e-150 nitrate transporter 1:2 (.1) Lus10032876 [exp] 437 / 5e-147 AT1G27040 445 / 1e-150 Major facilitator superfamily protein (.1.2) Lus10006477 [exp] 432 / 4e-145 AT1G27040 439 / 2e-148 Major facilitator superfamily protein (.1.2) Lus10033101 [exp] 407 / 1e-135 AT5G62730 748 / 0.0 Major facilitator superfamily protein (.1) Lus10002793 [exp] 405 / 2e-135 AT1G27040 418 / 7e-141 Major facilitator superfamily protein (.1.2) Lus10030799 [exp] 397 / 2e-131 AT1G69850 771 / 0.0 nitrate transporter 1:2 (.1) Lus10013276 [exp] 394 / 2e-130 AT1G69850 780 / 0.0 nitrate transporter 1:2 (.1) Lus10036710 [exp] 394 / 2e-130 AT1G69850 822 / 0.0 nitrate transporter 1:2 (.1) Lus10037217 [exp] 386 / 3e-127 AT1G69850 813 / 0.0 nitrate transporter 1:2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.004G064100.1 pacid=42796714 polypeptide=Potri.004G064100.1.p locus=Potri.004G064100 ID=Potri.004G064100.1.v4.1 annot-version=v4.1 ATGGAGAAACTTGAGTTTGTTGAAGGAAAGGTGGATTGGAAGGGAAGACAGGCTCTAAAGAATAAACATGGAGGATTATGGGCCTCTTTGCTTATACTAG TTATGTTTGCTTTAGAAAGCATGGCAACTATTTCTCTGGCAGTGAACTTCGTGACATACTTCAATGGAGTGATGCACTTCCAAATAGCAGATGCAGCTAA TATGGTAACCAACTACATGGGTGTCAGCTACATCCTCAGTATTGTGGCTGCTGTCCTTGCTGACACACTCTTTGGCAGGCACAGAACTGCTGTGATTTCA GGATGTCTCGAGTTGATGGGACTATCACTGCTTGCTTTTCAAGCTCACTATGCCAAGCTCAAGCCACCTCCATGCAACATCTTAGATCCAACTGCTCACT GCGAGAAAGTAGGAGGCGGCAATATAGTGCTTCTCTTTGTTTCACTATTCGTGCTTGCTGCTGGCTCTTCAGGCACCAAAGCTTCCGTGCCATCGCATGG TGCTGATCAGTTCGACGAGAAAGACCCGAAAGAGTTGATTCAGATGTCCAGCTACTTCAACTTTGTCTTGCTAGCAGTCTGCCTTGGTGCTGCAGTTAGC TTAACATTTTTTGTGTGGATACAAGACAACAAAGGATGGGACTGGGGGTTTGGAGTTGGTGCTATTTCCATGTTGTTGGCTGTGATCGTTTTTATTGCTG GATTGCCTATGCACCGGATACATGTTGTTCAAGGATCTAGCACGGTGGTTGAAATTTTGCAGGTGTATGTTGCCGCATTTCGTAACCGAAAGCTTCAACT TCCAGAAGATCCTTTAGACCTCTATGAGATTAACAAGGACAAGGAAGCTGCTATCGAAGCAGAATCTCTACCCCACAGAGATACTTTGAGATTCCTAGAT AAAGCTGCAATCCAAACATCTACAGAGAAGTTTTCAGAAGCTCCAAATCCATGGAAACTATGCAGGGTCACACAAGTAGAAAATGCAAAAATTTTACTTA GCATATTGCCGGTCTTTAGTTGCACCATTATCATGACCCTTTGCCTAGCTCAACTCCAAACTTTCTCAATTCAACAAGGACTCACCATGGACACCAGCAT TACCAAATCTTTCAACATCCCCCCAGCTTCTTTACCAATCATTCCAGTCATATTCCTGATTATCTTAGTCCCACTATATGATCGCTTAGTCGTGCCATTT GCTCGTAAGTTCACAGGCCTCCCTACAGGTATAACTCACCTTCAACGTATAGGGGTTGGTCTAATTCTCTCGTCTATATCCATGGCCTCGGCTGCATTAA TGGAAGTGAAGCGTAAAGACGTAGCAAGAGACCATAACATGCTAGATGCTATCCCTGTCTTACAGCCGTTGCCCATCAGTACTTTATGGATATCAATTCA GTTCTTCATATTCGGCATTGCAGACATGTTCACATATGTGGGACTTCTTGAGTTTTTCTACTCAGAGGCACCAAAAGGGCTCAAGTCCATCTCTACTTGC TTTCTTTGGTGTTCTATGGCACTTGGATATTTTCTCAGCACCATATTGGTTAATATAGTGAATGGTGTCACGAAGGGAAGTACTAAAAGTGGAGGGTGGT TAGCAGGCAATAATATTAACAGGAATAATTTGAACCTCTTTTACTGGTTGCTTTCTATATTAAGCTTCCTCAATTTCTGTGTCTATTTGTTTGTTGCTAG AAGATACACGTACAGGCCTCAGAACTCTAGTCTGCCTTCAAATGAGAACAGAGAGGCTCCTGCCAACCAAGAAGATAGAAGAGAGAATTAA
AA sequence Show only first row Show all	>Potri.004G064100.1 pacid=42796714 polypeptide=Potri.004G064100.1.p locus=Potri.004G064100 ID=Potri.004G064100.1.v4.1 annot-version=v4.1 MEKLEFVEGKVDWKGRQALKNKHGGLWASLLILVMFALESMATISLAVNFVTYFNGVMHFQIADAANMVTNYMGVSYILSIVAAVLADTLFGRHRTAVIS GCLELMGLSLLAFQAHYAKLKPPPCNILDPTAHCEKVGGGNIVLLFVSLFVLAAGSSGTKASVPSHGADQFDEKDPKELIQMSSYFNFVLLAVCLGAAVS LTFFVWIQDNKGWDWGFGVGAISMLLAVIVFIAGLPMHRIHVVQGSSTVVEILQVYVAAFRNRKLQLPEDPLDLYEINKDKEAAIEAESLPHRDTLRFLD KAAIQTSTEKFSEAPNPWKLCRVTQVENAKILLSILPVFSCTIIMTLCLAQLQTFSIQQGLTMDTSITKSFNIPPASLPIIPVIFLIILVPLYDRLVVPF ARKFTGLPTGITHLQRIGVGLILSSISMASAALMEVKRKDVARDHNMLDAIPVLQPLPISTLWISIQFFIFGIADMFTYVGLLEFFYSEAPKGLKSISTC FLWCSMALGYFLSTILVNIVNGVTKGSTKSGGWLAGNNINRNNLNLFYWLLSILSFLNFCVYLFVARRYTYRPQNSSLPSNENREAPANQEDRREN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G59740			Major facilitator superfamily ...		Potri.004G064100 [exp]	0	1
					Potri.003G126200 [exp]	1.41	0.9992
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.008G032200 [exp]	1.73	0.9993
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.011G064900 [exp]	2.23	0.9987
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.018G033500 [exp]	3.00	0.9990	PtrAMT4-2
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.010G104800 [exp]	3.46	0.9988
AT1G54630		ACP3	acyl carrier protein 3 (.1.2)		Potri.006G217800 [exp]	4.47	0.9980
AT3G08680			Leucine-rich repeat protein ki...		Potri.011G088000 [exp]	5.47	0.9987
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G213669 [exp]	8.00	0.9983
					Potri.002G158600 [exp]	8.12	0.9979
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G212700 [exp]	8.36	0.9986	Pt-BETV1.5

Compare expression of checked genes

Potri.004G064100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.