Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18960 313 / 8e-109 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT3G58780 258 / 7e-87 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G42830 248 / 7e-83 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT4G09960 228 / 3e-75 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT1G69120 137 / 1e-39 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT2G45650 136 / 2e-39 MADS AGL6 AGAMOUS-like 6 (.1) AT5G60910 135 / 5e-39 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT1G26310 133 / 7e-38 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT3G57230 132 / 1e-37 MADS AGL16 AGAMOUS-like 16 (.1.2) AT2G45660 131 / 1e-37 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G075800 [exp] 382 / 3e-136 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.013G104900 [exp] 240 / 4e-80 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.019G077200 [exp] 207 / 1e-67 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.015G134800 [exp] 141 / 7e-41 AT2G45650 209 / 2e-67 AGAMOUS-like 6 (.1) Potri.001G112400 [exp] 135 / 3e-39 AT4G22950 253 / 6e-86 AGAMOUS-like 19 (.1) Potri.012G062300 [exp] 135 / 5e-39 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.008G098400 [exp] 134 / 9e-39 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Potri.014G074100 [exp] 135 / 1e-38 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.012G132600 [exp] 133 / 4e-38 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005302 [exp] 235 / 1e-77 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10008264 [exp] 232 / 3e-76 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10009481 [exp] 203 / 8e-65 AT4G09960 274 / 1e-92 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10007324 [exp] 183 / 8e-58 AT4G18960 211 / 7e-69 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Lus10006715 [exp] 140 / 1e-40 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10002763 [exp] 131 / 4e-39 AT4G18960 133 / 3e-40 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Lus10034662 [exp] 134 / 1e-38 AT5G60910 284 / 3e-97 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10034663 [exp] 134 / 4e-38 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10017871 [exp] 131 / 5e-38 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10007983 [exp] 131 / 5e-37 AT5G60910 298 / 3e-102 FRUITFULL, AGAMOUS-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) PF01486 [poplar] [flax] K-box K-box region
Representative CDS sequence Show only first row Show all	>Potri.004G064300.3 pacid=42795498 polypeptide=Potri.004G064300.3.p locus=Potri.004G064300 ID=Potri.004G064300.3.v4.1 annot-version=v4.1 ATGGAATATCAAAATGAATCCCTTGAGAGCTCCCCCCTGAGGAAGCTGGGAAGGGGAAAGGTGGAGATCAAGCGGATCGAGAACACCACCAATCGCCAAG TCACTTTCTGCAAAAGGCGCAGTGGTTTGCTCAAGAAAGCCTACGAATTATCTGTTCTTTGCGATGCTGAGGTTGCACTCATCGTCTTCTCTAGCCGCGG TCGCCTTTATGAGTACTCTAACGATAGTGTCAAATCAACAATTGAGAGGTACAAAAAGGCATCTGCAGATTCTTCAAACACTGGGTCTGTTTCTGAAGCC AATGCTCAGTACTACCAGCAAGAAGCTGCCAAGCTGCGTTCCCAAATTGGTAATTTGCAGAATTCAAACAGGCATATGCTGGGTGAAGCGCTTAGTTCAT TGAGTGTGAAGGAACTTAAGAGTTTGGAAATACGACTTGAGAAAGGAATAAGCAGAATTCGTTCCAAAAAGAATGAGCTGTTGTTTGCAGAAATCGAGTA TATGCAGAAGAGGGAGGTTGACTTGCACAACAATAACCAGCTTCTCCGAGCAAAGATTTCAGAGAATGAAAGAAAGCGACAGAGCATGAATTTGATGCCA GGAGGAGCAGACTTTGAGATCGTGCAGTCTCAACCATATGACTCTCGGAACTATTCTCAAGTGAATGGATTACAGCCTGCAAGTCATTACTCACATCAAG ATCAGATGGCCCTTCAGTTAGTTTAA
AA sequence Show only first row Show all	>Potri.004G064300.3 pacid=42795498 polypeptide=Potri.004G064300.3.p locus=Potri.004G064300 ID=Potri.004G064300.3.v4.1 annot-version=v4.1 MEYQNESLESSPLRKLGRGKVEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNDSVKSTIERYKKASADSSNTGSVSEA NAQYYQQEAAKLRSQIGNLQNSNRHMLGEALSSLSVKELKSLEIRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNNNQLLRAKISENERKRQSMNLMP GGADFEIVQSQPYDSRNYSQVNGLQPASHYSHQDQMALQLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18960	MADS	AG	AGAMOUS, K-box region and MADS...		Potri.004G064300 [exp]	0	1
ATCG00220		ATCG00220.1, PS...	photosystem II reaction center...		Potri.013G142100 [exp]	3.87	0.9124
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Potri.014G122700 [exp]	4.00	0.9093
					Potri.016G004851 [exp]	5.47	0.8893
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Potri.004G092100 [exp]	6.85	0.9282
					Potri.001G287500 [exp]	12.44	0.9039
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Potri.018G028500 [exp]	18.60	0.9151
					Potri.002G109400 [exp]	22.71	0.9025
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Potri.014G149800 [exp]	25.47	0.8532
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Potri.003G122000 [exp]	27.49	0.8716
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.016G115500 [exp]	36.46	0.8802	CAX3.2

Compare expression of checked genes

Potri.004G064300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.