Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18950 633 / 0 Integrin-linked protein kinase family (.1) AT3G58760 589 / 0 Integrin-linked protein kinase family (.1) AT2G43850 388 / 1e-131 Integrin-linked protein kinase family (.1.2) AT2G31800 384 / 4e-130 Integrin-linked protein kinase family (.1) AT3G59830 381 / 1e-128 Integrin-linked protein kinase family (.1) AT1G14000 305 / 7e-100 VIK VH1-interacting kinase (.1) AT4G35780 180 / 2e-50 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT2G17700 175 / 7e-49 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT5G49470 170 / 2e-47 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06640 173 / 3e-47 PAS domain-containing protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G007800 [exp] 396 / 1e-134 AT2G31800 751 / 0.0 Integrin-linked protein kinase family (.1) Potri.007G142100 [exp] 387 / 9e-131 AT2G43850 726 / 0.0 Integrin-linked protein kinase family (.1.2) Potri.010G164500 [exp] 307 / 2e-100 AT1G14000 757 / 0.0 VH1-interacting kinase (.1) Potri.002G158950 [exp] 306 / 2e-100 AT4G18950 305 / 1e-99 Integrin-linked protein kinase family (.1) Potri.008G090800 [exp] 304 / 2e-99 AT1G14000 743 / 0.0 VH1-interacting kinase (.1) Potri.017G123100 [exp] 224 / 5e-69 AT4G18950 235 / 5e-73 Integrin-linked protein kinase family (.1) Potri.005G106200 [exp] 181 / 1e-50 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.007G060600 [exp] 178 / 1e-49 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 172 / 6e-49 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029277 [exp] 676 / 0 AT4G18950 601 / 0.0 Integrin-linked protein kinase family (.1) Lus10008350 [exp] 365 / 4e-121 AT2G31800 753 / 0.0 Integrin-linked protein kinase family (.1) Lus10027107 [exp] 335 / 5e-109 AT2G31800 709 / 0.0 Integrin-linked protein kinase family (.1) Lus10030387 [exp] 301 / 3e-98 AT3G58760 315 / 2e-103 Integrin-linked protein kinase family (.1) Lus10030435 [exp] 300 / 1e-97 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10026626 [exp] 299 / 2e-97 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10037851 [exp] 294 / 2e-95 AT3G58760 305 / 2e-99 Integrin-linked protein kinase family (.1) Lus10012517 [exp] 171 / 4e-47 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10022653 [exp] 168 / 1e-46 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10016912 [exp] 170 / 4e-46 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.004G064400.1 pacid=42796653 polypeptide=Potri.004G064400.1.p locus=Potri.004G064400 ID=Potri.004G064400.1.v4.1 annot-version=v4.1 ATGGAAGGGAAGAATCCATTGAGGTTTACGTTAGGAAAGCAATCGTCACTAGCACCGGAGAGAGACCGAGAAGAATCTGATGTTGATATGGATGGAGTTG ATCCAGGAGTGAGGCTAATGTACTTAGCTAATGAAGGAAATCTAGAAGGGATCAAAGAATTGGTGAATTCTGATGTTGATGTTAATTTTCGTGATATTGA TGGCCGTACTGCCCTTCATATTGCTTCTTGTCAAGGCCTCACTCAAGTTGTCGATCTTTTGCTCGATCATGGGGCCGAAATTGACCCCAAGGATCGTTGG GGGAGCACTCCTCTTGCAGATGCTATATTTTACAAAAACCATGATGTGATCAAACTCTTGGAGAAACGTGGTGCAAAACCTCTGATGGCTCCTATGCACG TTAAGCATGCACGTGAGGTCCCGGAATATGAAATCAATCCTGACGAACTGGATTTTACTAACAGTGTGGAATTAACTAAGGGAACCTTTTGCGTAGCATT ATGGCGAGGAATTCAGGTTGCTGTTAAAAAGCTTGGTGAGGAGGTGCTTTCGGACGAGGATAAAGTGAGAGCATTCAGAGATGAACTTGCATTGCTTCAG AAAATACGGCATCCAAATGTGGTCCAGTTTCTGGGTGCTGTTACTCAAAGTAGTCCAATGATGATTGTGACTGAATTTTTACCCAAGGGAGATTTTTGTG CGTTCTTGAAAAGAAAAGGAGCATTAAAACCAATAGCAGCTGTGAGACTTGCACTTGATATTGCAAGGGGAATGAATTACTTGCATGAGAATAAGCCGGT ACCAATAATTCACCGTGATCTTGAGCCTTCAAATATATTGCGGGATGATTCTGGGCATCTGAAAGTCGCAGACTTTGGAATTAGCAAGTTGCTTACAGTT AAAGAAGAAAAACCTCTAATTAGTCTCGACAATTCCTGGCGGTATGTGGCTCCAGAGGTTTTCAAAAATGAAGAATATGATACTAAAGTAGATATTTTTT CCTTTGCTTTAATCCTACAGGAGATGATTGAAGGCTGCCCGCCATTTTCTGCTAAACAAGAACATGAGGTTCCTTCAGCTTATGCGGCAAAAGAGCGTCC GCCTTTTAGAGCTCCAACAAAGTCCTATGCACATGGACTTAAAGAGTTAATTCAGGAGTGCTGGCATGAAAATCCAGCTAAGCGACCAACTTTCAGGCAG ATACTAACAAGACTGGATGCCATTCAAAACAGTATTGGTCATAAGAGGCGTTGGAAGGTGAGACCACTGAAATGCTTTCAGAACCTGGAGGCATTGTTAA AGAAAGATCGTAGTCTAAGCCACCGCAGTTCACGTTCTTACAGCAGTATATGA
AA sequence Show only first row Show all	>Potri.004G064400.1 pacid=42796653 polypeptide=Potri.004G064400.1.p locus=Potri.004G064400 ID=Potri.004G064400.1.v4.1 annot-version=v4.1 MEGKNPLRFTLGKQSSLAPERDREESDVDMDGVDPGVRLMYLANEGNLEGIKELVNSDVDVNFRDIDGRTALHIASCQGLTQVVDLLLDHGAEIDPKDRW GSTPLADAIFYKNHDVIKLLEKRGAKPLMAPMHVKHAREVPEYEINPDELDFTNSVELTKGTFCVALWRGIQVAVKKLGEEVLSDEDKVRAFRDELALLQ KIRHPNVVQFLGAVTQSSPMMIVTEFLPKGDFCAFLKRKGALKPIAAVRLALDIARGMNYLHENKPVPIIHRDLEPSNILRDDSGHLKVADFGISKLLTV KEEKPLISLDNSWRYVAPEVFKNEEYDTKVDIFSFALILQEMIEGCPPFSAKQEHEVPSAYAAKERPPFRAPTKSYAHGLKELIQECWHENPAKRPTFRQ ILTRLDAIQNSIGHKRRWKVRPLKCFQNLEALLKKDRSLSHRSSRSYSSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18950			Integrin-linked protein kinase...		Potri.004G064400 [exp]	0	1
AT1G28120			unknown protein		Potri.003G162600 [exp]	5.74	0.6381
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Potri.013G010900 [exp]	8.94	0.5396	ALPHA.11
AT5G53480			ARM repeat superfamily protein...		Potri.015G010400 [exp]	14.28	0.5962
AT3G55550			Concanavalin A-like lectin pro...		Potri.016G101000 [exp]	15.49	0.6031	Pt-LECRK7.1
AT5G60570			Galactose oxidase/kelch repeat...		Potri.013G077800 [exp]	21.21	0.5762
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.001G342200 [exp]	23.97	0.5360
AT5G63870		PP7, ATPP7	serine/threonine phosphatase 7...		Potri.011G145300 [exp]	26.58	0.5758
AT1G72550			tRNA synthetase beta subunit f...		Potri.013G068100 [exp]	49.59	0.5604
AT5G58360	OFP	ATOFP3, OFP3	ARABIDOPSIS THALIANA OVATE FAM...		Potri.004G003700 [exp]	76.95	0.5086
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Potri.019G077400 [exp]	89.19	0.4599

Compare expression of checked genes

Potri.004G064400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.