Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29670 528 / 0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 508 / 0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 504 / 3e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 498 / 7e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G33811 367 / 5e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 343 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G08460 332 / 4e-112 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 322 / 2e-108 GLIP7 GDSL-motif lipase 7 (.1) AT1G71250 317 / 2e-106 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19010 288 / 1e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G076500 [exp] 629 / 0 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076400 [exp] 378 / 2e-130 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102400 [exp] 370 / 2e-127 AT1G33811 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 361 / 6e-124 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008406 [exp] 359 / 3e-123 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008902 [exp] 359 / 3e-123 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 359 / 4e-123 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 358 / 5e-123 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008402 [exp] 358 / 8e-123 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011997 [exp] 573 / 0 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002777 [exp] 565 / 0 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 504 / 2e-180 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 503 / 2e-179 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 467 / 2e-165 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011996 [exp] 461 / 9e-163 AT1G29670 451 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005413 [exp] 419 / 7e-147 AT1G29670 399 / 3e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015242 [exp] 368 / 3e-127 AT5G45670 369 / 7e-128 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000893 [exp] 353 / 1e-120 AT1G33811 504 / 3e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 347 / 5e-118 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.004G064500.1 pacid=42795141 polypeptide=Potri.004G064500.1.p locus=Potri.004G064500 ID=Potri.004G064500.1.v4.1 annot-version=v4.1 ATGGAGGGGGTGCTAAAGAAATGTTGGGTGGTGGGTGTGATTTTTGCAGTAGTTTTGCTTTCAGAACCATATGGGGCTAGAGCGCAGCAAGTTCCTGGCT ACTTTATTTTCGGGGATTCGTTGGTCGATAATGGCAATAATAATCAGCTTTCATCTTTGGCTAGAGCTGATTATTTGCCTTATGGGATTGACTTCCGGCC TCCACGACCGACCGGAAGGTTTTGCAATGGCAGAACAACGGTTGATGTCATTGCTGAGCAACTGGGCTTCCGCAACTACATTCCACCTTATGCTACAGCA AGGGGCCGAGCTATTCTCGGAGGAGTGAATTATGCATCTGCTGCTGCCGGAATTAGAGATGAAACCGGCCAACAACTCGGAGATCGAATTAGTTTTAGTG GTCAAGTACGAAACTACCAGAATACGGTCTCACAAATTGTGAACATACTTGGGGACGAGGACACAGCAGCAAATTATCTAAGCAGGTGCATTTTCTCAAT TGGACTAGGCAGCAATGATTACCTTAACAATTATTTCATGCCTCAGATTTACTCATCAAGCCGCCAATATACTCCGGAGCAATATGCTAATGTTCTTATC CAACAATATACTGACCAGTTAAAGATTTTGTACAACTATGGAGCCAGGAAGTTTGTGTTGATTGGAGTGGGTCAGATAGGATGCAGCCCCAGTCAATTGG CCCAAAATAGTCCTGATGGGAGAACTTGTGTTCAGAAAATTAATTCTGCCAACCAGATTTTCAATAATAAGCTCAGATCTCTTGTTGCTCAGTTCAACGG CAATACTCCTGATGCGAGATTTATCTACATCAATGCTTATGGGATCTTTCAAGATATAATAAACAGACCTGCAACTTTTGGTTTTACTGTTACAAATGCT GGATGTTGCGGTGTTGGGAGGAATAATGGCCAAATTACATGTCTACCTTTACAAAATCCATGCCGAAATAGGGACCAATATGTGTTTTGGGATGCATTTC ACCCGACTGAGGCAGCAAACGTAATTATTGGAAGGAGATCTTACAGTGCACAATCTGCATCGGATGCATACCCGTTCGATATTCGCCGGCTGGCTCAGTC CTGA
AA sequence Show only first row Show all	>Potri.004G064500.1 pacid=42795141 polypeptide=Potri.004G064500.1.p locus=Potri.004G064500 ID=Potri.004G064500.1.v4.1 annot-version=v4.1 MEGVLKKCWVVGVIFAVVLLSEPYGARAQQVPGYFIFGDSLVDNGNNNQLSSLARADYLPYGIDFRPPRPTGRFCNGRTTVDVIAEQLGFRNYIPPYATA RGRAILGGVNYASAAAGIRDETGQQLGDRISFSGQVRNYQNTVSQIVNILGDEDTAANYLSRCIFSIGLGSNDYLNNYFMPQIYSSSRQYTPEQYANVLI QQYTDQLKILYNYGARKFVLIGVGQIGCSPSQLAQNSPDGRTCVQKINSANQIFNNKLRSLVAQFNGNTPDARFIYINAYGIFQDIINRPATFGFTVTNA GCCGVGRNNGQITCLPLQNPCRNRDQYVFWDAFHPTEAANVIIGRRSYSAQSASDAYPFDIRRLAQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.004G064500 [exp]	0	1
AT1G54820			Protein kinase superfamily pro...		Potri.005G036600 [exp]	1.00	0.9989
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.006G205500 [exp]	1.73	0.9987
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Potri.001G347300 [exp]	2.44	0.9977
					Potri.002G252200 [exp]	3.31	0.9973
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Potri.001G191400 [exp]	4.47	0.9983
AT1G29510		SAUR68	SMALL AUXIN UPREGULATED 68, SA...		Potri.009G140900 [exp]	5.29	0.9961
AT4G23400		PIP1D, PIP1;5	plasma membrane intrinsic prot...		Potri.009G128500 [exp]	8.36	0.9982
AT2G01505		CLE16	CLAVATA3/ESR-RELATED 16 (.1)		Potri.008G130800 [exp]	8.83	0.9951
AT4G16515		RGF6	root meristem growth factor 6,...		Potri.001G122600 [exp]	10.77	0.9925
AT4G15630			Uncharacterised protein family...		Potri.008G205100 [exp]	10.95	0.9951

Compare expression of checked genes

Potri.004G064500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.