Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78580 1305 / 0 ATTPS1 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) AT1G16980 981 / 0 ATTPS2 TREHALOSE -6-PHOSPHATASE SYNTHASE S2, trehalose-phosphatase/synthase 2 (.1) AT4G27550 956 / 0 ATTPS4 ARABIDOPSIS THALIANA TREHALOSE PHOSPHATASE/SYNTHASE 4, trehalose-6-phosphatase synthase S4 (.1) AT1G17000 920 / 0 ATTPS3 TREHALOSE -6-PHOSPHATASE SYNTHASE S3, trehalose-phosphatase/synthase 3 (.1) AT1G06410 430 / 5e-137 ATTPSA, ATTPS7 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) AT4G17770 429 / 2e-136 ATTPS5 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) AT1G68020 406 / 1e-127 ATTPS6 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) AT1G23870 397 / 3e-124 ATTPS9 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) AT1G70290 390 / 7e-122 ATTPSC, ATTPS8 trehalose-6-phosphatase synthase S8 (.1) AT1G60140 387 / 2e-120 ATTPS10 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G103900 [exp] 1340 / 0 AT1G78580 1538 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Potri.001G383600 [exp] 1312 / 0 AT1G78580 1493 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Potri.003G094500 [exp] 427 / 8e-136 AT4G17770 1442 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.001G139500 [exp] 427 / 8e-136 AT4G17770 1429 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.010G104500 [exp] 426 / 2e-135 AT1G68020 1415 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.008G136500 [exp] 413 / 1e-130 AT1G68020 1410 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.015G074000 [exp] 412 / 9e-130 AT1G23870 1285 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.018G097700 [exp] 410 / 3e-129 AT2G18700 1118 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) Potri.012G078500 [exp] 409 / 7e-129 AT1G23870 1284 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015243 [exp] 1344 / 0 AT1G78580 1354 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Lus10005412 [exp] 1333 / 0 AT1G78580 1338 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Lus10005559 [exp] 1293 / 0 AT1G78580 1507 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Lus10013694 [exp] 1287 / 0 AT1G78580 1501 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Lus10034585 [exp] 415 / 3e-131 AT1G68020 1462 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10015509 [exp] 409 / 7e-129 AT2G18700 1168 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) Lus10021805 [exp] 409 / 7e-129 AT1G68020 1452 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10015231 [exp] 405 / 2e-127 AT1G06410 1337 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10020741 [exp] 404 / 7e-127 AT1G06410 1278 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10005425 [exp] 402 / 2e-126 AT1G06410 1338 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00982 [poplar] [flax] Glyco_transf_20 Glycosyltransferase family 20 CL0137 [poplar] [flax] HAD PF02358 [poplar] [flax] Trehalose_PPase Trehalose-phosphatase
Representative CDS sequence Show only first row Show all	>Potri.004G064600.1 pacid=42795036 polypeptide=Potri.004G064600.1.p locus=Potri.004G064600 ID=Potri.004G064600.1.v4.1 annot-version=v4.1 ATGCCAGGGAGCAAGTGTAATGTTGATCCTGCCACACCCAAAAGTAGAACAGAAAGGCTAATGAAGGAAAGAAATTTACGGAAATTAAACAGGGTGTTTA ATCTGAATGAGAAAGCAGGAGATAGTTTGAGAGATGCAGATCTCTTTTCTAATGATTCGGCATTAACTGAAACTGAAAATTGTGCTTCACTTAATGAGGA AGAATTGTCTGAAGGGATCGATGGATATGAAAGGCAAGATCAGAGGCTTCCTAAACAACGTTTATTGGTGGTTGCCAATAGGTTGCCCGTCTCTGCAGTT AGGCAGGGCAAGGATTCATGGCAACTTGAGATAAGTGTAGGTGGGCTGGTCAGTGCACTTTTGGGTCTGAAGGAGTTTGATGCCAGGTGGATTGGTTGGG CTGGTGTAAATGTGCCTGATGAAATTGGACAAGAAGCACTAACTAAAGCTTTGGCTGAAAAGAAATGCATCCCAGTTTTCCTGGACGAAGACACTGTTCA TCAGTATTATAATGGTTATTGTAACAACATAATATGGCCTCTTTTCCATTATCTTGGGCTACCCCAAGAAGATCGCCTTTCAACCACCCGTAGTTTTCAA TCTCAATTTGATGCTTATAAGAAGGCAAACCAAATGTTTGCTGATGTAGTGCACGAACATTATGAGGAGGGTGATGTTGTTTGGTGCCATGATTACCACC TAATGTTTCTTCCCAGATGTCTGAAAGAGAAAAACAGCAACATCAAAGTCGGTTGGTTTCTTCACACTCCTTTTCCCTCCTCTGAAATACACAGGATGCT GCCATCTCGTAGAGACCTGTTGGAATCTGTTCTTGCAGCCGATTTAGTTGGTTTTCACACATATGATTATGCAAGACATTTTGTCAGTGCTTGCACTCGT ATCCTTGGGCTTGAGGGTACACCTGAAGGAGTAGAGAATCAGGGAAAGCTGACTCGTGTAGCAGCGTTTCCTATTGGGATAGATTCCGATCGATTCATTC GAGCTCTGGAGCTCCCTCAGGTCCAGGATCACATAAAAGAACTGAAAGAAAGATTTGCTGGCAGAAAGGTAATGTTAGGCGTTGATCGTCTTGATATGAT AAAAGGAATTCCCCAAAAGATATTGGCGTTTGAAGAGTTCCTTGAGGAAAATCCAGAGTGGCGTGATAAAGTAGTTTTGCTACAAATTGCTGTGCCAACA AGAACAGATGTTCCGGAATATCAAAAGCTTTCTAGCCAGGTCCATGAGATTGTTGGGCGCATCAATGGGAGATTTGGGACTCTCACTGCGGTTCCAATAC ATCATCTGGACCGGTCTCTTGACTTTCATGCGTTATGTGCGCTATATGCTGTTACTGATGTGGCGCTTATTACGTCTTTAAGAGATGGAATGAATCTTGT AAGCTATGAGTTTGTTGCCTGCCAAGCTTCCAAGAAAGGGGTGCTCATTCTGAGTGAGTTTGCAGGTGCAGCTCAGTCTCTTGGCGCTGGAGCCCTCTTG GTGAATCCATGGAATATTGCAGAAGTTGCTGCTTCAATTAGTCAGGCTTTGAATATGCCAGCTGATGAAAGAGAAAAAATGCATCAGCATAACTTCATGC ATGTGACAACACACACATCACAAGAGTGGGCTGCTACTTTTGTAAGTGAACTAAATGATACCATTATTGAAGCCCAACTAAGGACAAGACAAGTTCCCTT ACTTCCTGTCAAAGTTGCAGTTGAACGATATTTGCAATCCAATAATCGTTTGCTTATGCTGGGTTTCAATGCAACTTTAACTGAACCAGCAAACACTCAA GGAGTTAGAGGCGGTCATATTAGAGAGCTGCAATCTAGATTGCACCCGGAAATAAAAGAAACCTTGAAAAAACTTTGTGATGATCGTAGAACAAACATTG TTATTCTCAGTGGAAGTGATAGAGCTGTCCTGGATGATAATTTTCGAGAATACAATTTGTGGTTGGCAGCAGAAAATGGAATGTTTTTACGCCATAGTAC AGGAGAATGGATGACAACAATGCCAGAAAATTTGAATATGGATTGGGTTGACAGTGTTAAGCATGTTTTCGAGTATTTTACAGAAAGAACACCTGGATCT CATTTTGAGCTTCGTGAAACTTCACTTGTATGGAAATACAAGTATGCAGAGAGTCATTTTGGAAAGCTTCAATCAAAGGATATGCTACAGCATCTCTGGA CTGGTCCTATTTCAAACGCAGCTGTTGATGTTGTCCAAGGTGATCGATCTGTTGAGGTTCGATCTGTTGGTGTGACAAAGGGAGCAGCAATTGATCGTAT TTTAGGGGAAATAGTTCGTAACAAGGGCATGAAGTCACCGATTGATTATGTCCTTTGTGCTGGGCACTTTCTAAGTAAGGATGAAGATGTCTATACATTT TTTGAGCCAGAGCTTCCTTGTGAATCACTAGCCTTAGCACGAACCAGGTCACTAGATCCTGCGAGGACATCTATTTCAATGATTCCAGACAGTACAAACC AAGTCAAGGCTCATCAGTTAAGGAAGCAACGCTCATTGTCAACTTTGGAAAGGAGCAATTATCGAAGTGCTGCTTGGCGGCCTATAGTTCATGATAGAAT GTCATTGCCAGAGGGCTCATCTGTACTTGATCTCAAGGCTGAGAATTTCTTCTCTTGTACTGTTTCCCGGAAGCAATCGGAGGCTCGATATCTCCTTCAG TCATCAGATGATGTTGTCACACTCTTAAAAGAGCTGGCAGAGTCTAAATCACCTAATTGA
AA sequence Show only first row Show all	>Potri.004G064600.1 pacid=42795036 polypeptide=Potri.004G064600.1.p locus=Potri.004G064600 ID=Potri.004G064600.1.v4.1 annot-version=v4.1 MPGSKCNVDPATPKSRTERLMKERNLRKLNRVFNLNEKAGDSLRDADLFSNDSALTETENCASLNEEELSEGIDGYERQDQRLPKQRLLVVANRLPVSAV RQGKDSWQLEISVGGLVSALLGLKEFDARWIGWAGVNVPDEIGQEALTKALAEKKCIPVFLDEDTVHQYYNGYCNNIIWPLFHYLGLPQEDRLSTTRSFQ SQFDAYKKANQMFADVVHEHYEEGDVVWCHDYHLMFLPRCLKEKNSNIKVGWFLHTPFPSSEIHRMLPSRRDLLESVLAADLVGFHTYDYARHFVSACTR ILGLEGTPEGVENQGKLTRVAAFPIGIDSDRFIRALELPQVQDHIKELKERFAGRKVMLGVDRLDMIKGIPQKILAFEEFLEENPEWRDKVVLLQIAVPT RTDVPEYQKLSSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALITSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGALL VNPWNIAEVAASISQALNMPADEREKMHQHNFMHVTTHTSQEWAATFVSELNDTIIEAQLRTRQVPLLPVKVAVERYLQSNNRLLMLGFNATLTEPANTQ GVRGGHIRELQSRLHPEIKETLKKLCDDRRTNIVILSGSDRAVLDDNFREYNLWLAAENGMFLRHSTGEWMTTMPENLNMDWVDSVKHVFEYFTERTPGS HFELRETSLVWKYKYAESHFGKLQSKDMLQHLWTGPISNAAVDVVQGDRSVEVRSVGVTKGAAIDRILGEIVRNKGMKSPIDYVLCAGHFLSKDEDVYTF FEPELPCESLALARTRSLDPARTSISMIPDSTNQVKAHQLRKQRSLSTLERSNYRSAAWRPIVHDRMSLPEGSSVLDLKAENFFSCTVSRKQSEARYLLQ SSDDVVTLLKELAESKSPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.004G064600 [exp]	0	1
AT2G21110			Disease resistance-responsive ...		Potri.009G130900 [exp]	27.54	0.6769
					Potri.009G159650 [exp]	34.62	0.6130
					Potri.018G072801 [exp]	36.53	0.7092
AT5G38460			ALG6, ALG8 glycosyltransferase...		Potri.004G100500 [exp]	79.59	0.6178
AT3G14760			unknown protein		Potri.001G382800 [exp]	104.85	0.5813
AT2G41550			Rho termination factor (.1)		Potri.006G046700 [exp]	137.79	0.6167
AT2G34930			disease resistance family prot...		Potri.003G196766 [exp]	148.49	0.6030
					Potri.014G100650 [exp]	165.12	0.5727
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Potri.010G160350 [exp]	258.76	0.5745

Compare expression of checked genes

Potri.004G064600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.