Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GA2.9,GA2ox3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30040 447 / 7e-159 ATGA2OX2 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) AT2G34555 393 / 2e-137 ATGA2OX3 gibberellin 2-oxidase 3 (.1) AT1G78440 371 / 1e-128 ATGA2OX1 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) AT1G02400 288 / 2e-96 ATGA2OX4, ATGA2OX6, DTA1 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) AT1G47990 273 / 3e-90 ATGA2OX4 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) AT1G78550 164 / 2e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G15550 155 / 3e-44 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) AT5G08640 154 / 3e-44 ATFLS1, FLS flavonol synthase 1 (.1.2) AT3G13610 150 / 1e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 150 / 2e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G378400 [exp] 484 / 2e-173 AT1G78440 404 / 1e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.011G095600 [exp] 477 / 4e-170 AT1G78440 404 / 4e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.014G117300 [exp] 340 / 8e-117 AT1G02400 367 / 2e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.002G191900 [exp] 327 / 2e-111 AT1G02400 394 / 7e-138 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.008G101600 [exp] 318 / 4e-108 AT1G47990 350 / 2e-120 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.010G149700 [exp] 317 / 1e-107 AT1G47990 318 / 4e-108 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.015G002800 [exp] 161 / 1e-46 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176600 [exp] 153 / 3e-43 AT1G15550 452 / 1e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.012G006300 [exp] 151 / 5e-43 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023311 [exp] 421 / 2e-148 AT1G30040 381 / 6e-133 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Lus10025016 [exp] 315 / 1e-106 AT1G02400 367 / 4e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10009998 [exp] 302 / 2e-101 AT1G02400 362 / 3e-125 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10004511 [exp] 298 / 8e-100 AT1G02400 347 / 3e-119 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10038498 [exp] 273 / 2e-92 AT1G78440 258 / 2e-86 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Lus10037816 [exp] 253 / 5e-83 AT1G02400 298 / 4e-101 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10017094 [exp] 252 / 3e-82 AT1G02400 305 / 4e-103 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10011476 [exp] 163 / 4e-47 AT1G15550 412 / 1e-143 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10024882 [exp] 154 / 6e-44 AT5G24530 271 / 2e-89 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000711 [exp] 150 / 1e-42 AT5G24530 263 / 4e-86 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.004G065000.1 pacid=42794856 polypeptide=Potri.004G065000.1.p locus=Potri.004G065000 ID=Potri.004G065000.1.v4.1 annot-version=v4.1 ATGGTAGTACTTTCCCAACTAGCTCTAGAACCTTTCTCAGTTATCAAAACATGCAAGCCTATAGGCTTGTTTTCCGAGATACCCGTTATAGACTTGACAG ACCCTCATGCCAAGACTCTCATAATCAAGGCCTGTGAAGAGTTTGGATTCTTCAAGCTGGTAAATCATGGAGTTCCAATGGAAGTCATGACCAAATTGGA AGCTCTTGCTACCAACTTCTTTAACCTCCCCCAGCCTGAGAAAGACAAGGCTGGACCTCCTAACCCTTTTGGCTACGGAAACAAGAAAATTGGCCCTAAT GGTGATGTTGGTTGGGTTGAATATCTCCTCCTTAACACCAACCCTCAAATCTCCTCCCAAAAAACGTCCATTTTTCAGGAAAACCCACAGATTTTCCGCT CTGCTGTTGAAGATTACATACTGGCAGTGAAGAGAATGGCTTTTGAAGTATTGGAATTGATGGCTGATGGGCTGGAGATTGAGTCAAGGAATGTGTTCAG TAGGCTGTTGAGGGATGATAAGAGTGATTCATGTTTCAGGCTAAACCACTACCCACCATGCTCAGAGCTGCAAGCATTGAGTGGTGGAAATTTGATTGGG TTTGGCGAGCACACAGACCCACAGATAATATCTGTTCTAAGATCTAACAACACAAGTGGCCTGCAAATTTGTCTGAAAGAGGGAACTTGGGTTTCAGTCC CCCCTGATCAGACCTCTTTTTTCATCAATGTTGGTGATGCCTTGCAGGTGATGACAAATGGAAGGTTTAGGAGTGTCAAGCACAGGGTTTTGGCTGATCC CCTGAAACCAAGGATTTCCATGATTTTCTTCGGTGGTCCACCTTTAAGTGAAAAGATAGCACCTTTACCCTCCTTGATGGCAGAAAGAGGAGGAAGCTTA TACAAGGAGTTCACATGGTTTGAATACAAAAGGTCCGCATACAAGTCAAGGCTAGCTGATTACAGACTTGGGCTATTTGAGAAAACTGCAGGCCAATGA
AA sequence Show only first row Show all	>Potri.004G065000.1 pacid=42794856 polypeptide=Potri.004G065000.1.p locus=Potri.004G065000 ID=Potri.004G065000.1.v4.1 annot-version=v4.1 MVVLSQLALEPFSVIKTCKPIGLFSEIPVIDLTDPHAKTLIIKACEEFGFFKLVNHGVPMEVMTKLEALATNFFNLPQPEKDKAGPPNPFGYGNKKIGPN GDVGWVEYLLLNTNPQISSQKTSIFQENPQIFRSAVEDYILAVKRMAFEVLELMADGLEIESRNVFSRLLRDDKSDSCFRLNHYPPCSELQALSGGNLIG FGEHTDPQIISVLRSNNTSGLQICLKEGTWVSVPPDQTSFFINVGDALQVMTNGRFRSVKHRVLADPLKPRISMIFFGGPPLSEKIAPLPSLMAERGGSL YKEFTWFEYKRSAYKSRLADYRLGLFEKTAGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30040		ATGA2OX2	GIBBERELLIN 2-OXIDASE 2, gibbe...		Potri.004G065000 [exp]	0	1	GA2.9,GA2ox3
AT1G36940			unknown protein		Potri.002G089650 [exp]	6.85	0.9365
AT1G66910			Protein kinase superfamily pro...		Potri.015G018101 [exp]	21.14	0.9245
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025200 [exp]	23.23	0.9119
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Potri.007G140500 [exp]	25.21	0.9226
AT1G66920			Protein kinase superfamily pro...		Potri.012G003500 [exp]	32.63	0.9220
AT1G70250			receptor serine/threonine kina...		Potri.012G003450 [exp]	34.29	0.9207
AT1G07650			Leucine-rich repeat transmembr...		Potri.019G007900 [exp]	35.29	0.9126
					Potri.017G111150 [exp]	37.10	0.9163
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Potri.008G041400 [exp]	40.21	0.9188	Pt-MLO12.2
AT1G77810			Galactosyltransferase family p...		Potri.002G089800 [exp]	43.26	0.9044

Compare expression of checked genes

Potri.004G065000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.