Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34560 600 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G80350 286 / 7e-92 FTR, FRC2, FRA2, BOT1, ATKTN1, AAA1, LUE1, ERH3, MAD5 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G27600 268 / 1e-85 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) AT2G45500 256 / 7e-81 AAA-type ATPase family protein (.1.2) AT3G27120 243 / 7e-76 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G02890 214 / 2e-61 AAA-type ATPase family protein (.1.2) AT3G19740 213 / 2e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G64110 212 / 3e-61 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G50140 211 / 1e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G02480 209 / 2e-59 AAA-type ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G085200 [exp] 749 / 0 AT2G34560 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G176900 [exp] 296 / 8e-96 AT1G80350 809 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G057800 [exp] 287 / 3e-92 AT1G80350 814 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G022216 [exp] 271 / 3e-87 AT2G27600 701 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.009G144300 [exp] 268 / 4e-86 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022300 [exp] 268 / 6e-86 AT2G27600 703 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.010G237100 [exp] 268 / 8e-86 AT2G27600 702 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.004G184500 [exp] 268 / 9e-86 AT2G27600 740 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.014G071900 [exp] 251 / 2e-78 AT2G45500 696 / 0.0 AAA-type ATPase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038499 [exp] 657 / 0 AT2G34560 579 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10023310 [exp] 633 / 0 AT2G34560 551 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10011477 [exp] 292 / 4e-94 AT1G80350 904 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023115 [exp] 291 / 1e-93 AT1G80350 906 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10004891 [exp] 269 / 4e-86 AT2G27600 801 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10019537 [exp] 266 / 3e-85 AT2G27600 791 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10020589 [exp] 265 / 4e-84 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10038001 [exp] 257 / 3e-81 AT2G45500 679 / 0.0 AAA-type ATPase family protein (.1.2) Lus10009233 [exp] 256 / 1e-80 AT2G45500 670 / 0.0 AAA-type ATPase family protein (.1.2) Lus10043381 [exp] 248 / 1e-77 AT2G27600 778 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05496 [poplar] [flax] RuvB_N Holliday junction DNA helicase RuvB P-loop domain
Representative CDS sequence Show only first row Show all	>Potri.004G065100.1 pacid=42795360 polypeptide=Potri.004G065100.1.p locus=Potri.004G065100 ID=Potri.004G065100.1.v4.1 annot-version=v4.1 ATGGCCGATGAACCTTCTGTCACTCGCTGGTCTTTTCAGGATTTTAAAACATTTTATGATGGTAAGTTTGGGAGAAAAAAGGCAGCAGCAGCAGAAGCAG AAGCAGCATCGGATTCGCAGCAAAACGGTCAAACAACAGTAGTAGCATCGAATGGAAATGGTCATGTCAATAATTCTTCAGATATGGCCATTTATGAGCA GTACAGAAACCAATATGGGAACTCAACAACACATTCGAACGGAGTTTTGTCTAATGGAGTTAATGAAAGACCAAAGAAGTCTTTGCTTCCTGCTTTTGAT TCTGCTGAAACACGTGCATTGGCCGAGAGTTTATGCAGGGACATCATTCGCGGGAGTCCAGATGTCAAGTGGGAAAGCATTAAGGGGCTGGAGAATGCAA AACGTTTACTGAAAGAAGCAGTAGTAATGCCGATAAAATATCCCAAATACTTCACTGGTCTTCTGTCGCCATGGAAAGGCATTCTTCTTTTTGGCCCTCC AGGGACAGGAAAGACAATGCTTGCGAAGGCGGTTGCTACAGAGTGCAAAACCACATTTTTCAATATTTCAGCATCTTCAGTGGTTAGCAAGTGGCGGGGT GATTCAGAGAAGTTAATAAAGGTGTTATTTGAGCTTGCTAGGCACCATGCACCATCAACTATATTTCTTGATGAAATCGATGCTATTATCAGTCAACGTG GTGAAGCTCGCAGTGAGCATGAAGCAAGTAGGCGTTTGAAGACCGAACTGCTCATACAGATGGATGGTTTGAATCGCACAAACGAGCTCGTTTTTGTTTT GGCAGCGACTAATCTCCCTTGGGAGTTGGATGCAGCTATGCTCCGGCGTCTTGAGAAGCGAATTCTTGTACCCCTTCCAGAACCAGAAGCTAGAGCAGCC ATGTTTGAAGAACTCCTGCCATCACAGCCCGATGAGGAGAAGCTTCCTTATGATTTGTTGGTGGAAAGAACAGAAGGTTTTTCTGGTTCAGATATTCGGC TATTATGCAAAGAGGCTGCCATGCAACCATTGAGACGCATAATGACTCTCCTTGAAGACACAGAGGAAGTAGTGCCTGAGGATGAGTTGCCGAAAGTTGG GCCAATCAGACCTGAGGATATAGAGACGGCTTTGAAGAACACAAGGCCATCTGCTCATCTCCACGCCCATCGCTATGACAAATTCAATGCTGATTACGGC AGTCAGATACTCCAATGA
AA sequence Show only first row Show all	>Potri.004G065100.1 pacid=42795360 polypeptide=Potri.004G065100.1.p locus=Potri.004G065100 ID=Potri.004G065100.1.v4.1 annot-version=v4.1 MADEPSVTRWSFQDFKTFYDGKFGRKKAAAAEAEAASDSQQNGQTTVVASNGNGHVNNSSDMAIYEQYRNQYGNSTTHSNGVLSNGVNERPKKSLLPAFD SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRG DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLNRTNELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARAA MFEELLPSQPDEEKLPYDLLVERTEGFSGSDIRLLCKEAAMQPLRRIMTLLEDTEEVVPEDELPKVGPIRPEDIETALKNTRPSAHLHAHRYDKFNADYG SQILQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34560			P-loop containing nucleoside t...		Potri.004G065100 [exp]	0	1
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Potri.006G184500 [exp]	1.00	0.9454
AT3G13845			unknown protein		Potri.001G196150 [exp]	2.00	0.9355
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Potri.008G204000 [exp]	4.89	0.9182	Pt-ECR1.1
AT5G14430			S-adenosyl-L-methionine-depend...		Potri.001G342300 [exp]	5.09	0.9064
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Potri.011G166100 [exp]	6.92	0.9256
					Potri.001G466500 [exp]	6.92	0.9307
AT1G44760			Adenine nucleotide alpha hydro...		Potri.005G177100 [exp]	7.00	0.8977
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.017G138401 [exp]	7.74	0.9332
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Potri.004G119400 [exp]	9.79	0.8840
AT1G60460			unknown protein		Potri.010G041900 [exp]	10.39	0.9113

Compare expression of checked genes

Potri.004G065100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.