Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14420 651 / 0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) AT3G14415 641 / 0 Aldolase-type TIM barrel family protein (.1.2.3) AT4G18360 637 / 0 Aldolase-type TIM barrel family protein (.1.2) AT3G14130 462 / 1e-163 Aldolase-type TIM barrel family protein (.1) AT3G14150 452 / 7e-160 Aldolase-type TIM barrel family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G112700 [exp] 667 / 0 AT3G14420 669 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.001G394400 [exp] 663 / 0 AT3G14420 668 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.003G069600 [exp] 452 / 2e-159 AT3G14130 502 / 2e-179 Aldolase-type TIM barrel family protein (.1) Potri.003G069400 [exp] 451 / 2e-159 AT3G14130 529 / 0.0 Aldolase-type TIM barrel family protein (.1) Potri.003G069300 [exp] 438 / 4e-154 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038507 [exp] 658 / 0 AT4G18360 665 / 0.0 Aldolase-type TIM barrel family protein (.1.2) Lus10023302 [exp] 656 / 0 AT4G18360 664 / 0.0 Aldolase-type TIM barrel family protein (.1.2) Lus10013725 [exp] 646 / 0 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10005590 [exp] 646 / 0 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10042495 [exp] 457 / 1e-162 AT4G18360 461 / 1e-164 Aldolase-type TIM barrel family protein (.1.2) Lus10013171 [exp] 436 / 3e-153 AT3G14130 521 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10008133 [exp] 431 / 3e-151 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10038144 [exp] 424 / 7e-150 AT4G18360 435 / 4e-154 Aldolase-type TIM barrel family protein (.1.2) Lus10013173 [exp] 214 / 7e-69 AT3G14130 246 / 7e-82 Aldolase-type TIM barrel family protein (.1) Lus10013724 [exp] 163 / 5e-50 AT3G14420 170 / 2e-53 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF01070 [poplar] [flax] FMN_dh FMN-dependent dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.004G065200.3 pacid=42795261 polypeptide=Potri.004G065200.3.p locus=Potri.004G065200 ID=Potri.004G065200.3.v4.1 annot-version=v4.1 ATGGATCAGATAACAAATGTAATGGAGTATCAGGAAATTGCAAGGCAGAAACTGCCCAAGATGGTTTATGACTATTATGCATCAGGTGCAGAGGACCAGT GGACACTTAAGGAGAACCGGAACGCCTTCTCTCGCATTTTATTTCGGCCACGCATTCTTATTGATGTTAGCAAGATTGACATGTCAACAACTGTCCTGGG CTTCAAGATTTCAATGCCTATCATGATTGCGCCAACAGCAATGCAGAAAATGGCTCACCCAGAAGGAGAGTATGCAACAGCTAGAGCAGCTTCAGCAGCT GACACAATCATGACACTATCCTCATGGGCTACTTCTAGTGTTGAGGAGGTTGCTTCAACTGGGCCAGGCGTCCGATTTTTCCAACTCTATGTGCATAAAG ACAGGAATGTGGTTGCCCAGCTCGTAAGAAGAGCTGAGAGGGCTGGTTTCAAGGCAATTGCCCTCACTGTGGATACTCCAAGACTTGGCCGTAGGGAAGC TGATATCAAAAACAGATTTACAATGCCACCATATTTGACTTTGAAGAACTTTGAGGGCTTAGACCTTGGCAAGATGGATAAGACTGATGACTCTGGACTA GCATCGTATGTTGCTGAACAAATTGATCGGTCACTTAGCTGGAAGGATGTGAAGTGGCTTCAGACAATCACATCATTGCCGATTCTATTGAAGGGTGTAC TCACTGCTGAGGATGCAAGGCTAGCCGTACAGAATGGGGCTGCAGGAATCATTGTCTCCAATCATGGAGCACGCCAGCTTGATTACGTTCCTTCCACTAT TATAGCCTTGGAAGAGGTTGTCAAAGCTGTACAAGGCCGTGTTCCTGTTTTTCTTGATGGTGGAGTTCGGCGCGGAACAGATGTTTTCAAGGCAATGGCC CTTGGAGCATCTGGAATATTTATTGGAAGGCCAGTTGTCTTCTCATTGGCCGCTGACGGTGAAGCTGGAGTTAGGAAGGTACTTCAGATGCTTCGTGATG AGTTTGAGCTGACGATGGCTTTAAATGGTTGCCGCTCGCTAAAGGAGATTAGTCGCAACCACATCGTGGCAGACTGGGACCCTCCCCGAGTTGTGCCAAA GTTATAA
AA sequence Show only first row Show all	>Potri.004G065200.3 pacid=42795261 polypeptide=Potri.004G065200.3.p locus=Potri.004G065200 ID=Potri.004G065200.3.v4.1 annot-version=v4.1 MDQITNVMEYQEIARQKLPKMVYDYYASGAEDQWTLKENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAA DTIMTLSSWATSSVEEVASTGPGVRFFQLYVHKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTMPPYLTLKNFEGLDLGKMDKTDDSGL ASYVAEQIDRSLSWKDVKWLQTITSLPILLKGVLTAEDARLAVQNGAAGIIVSNHGARQLDYVPSTIIALEEVVKAVQGRVPVFLDGGVRRGTDVFKAMA LGASGIFIGRPVVFSLAADGEAGVRKVLQMLRDEFELTMALNGCRSLKEISRNHIVADWDPPRVVPKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14420			Aldolase-type TIM barrel famil...		Potri.004G065200 [exp]	0	1
AT2G33590			NAD(P)-binding Rossmann-fold s...		Potri.005G257700 [exp]	1.00	0.8904
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Potri.002G052900 [exp]	3.00	0.8610	Pt-RANGAP1.2
AT3G52200		LTA3	Dihydrolipoamide acetyltransfe...		Potri.008G027400 [exp]	4.12	0.8195	Pt-LTA3.1
AT1G63830			PLAC8 family protein (.1.2.3)		Potri.001G101100 [exp]	5.09	0.8236
AT5G13190		AtGILP	GSH-induced LITAF domain prote...		Potri.001G061900 [exp]	6.48	0.8347
AT5G63970			Copine (Calcium-dependent phos...		Potri.005G065700 [exp]	8.71	0.8538
AT5G20400			2-oxoglutarate (2OG) and Fe(II...		Potri.018G121700 [exp]	10.29	0.8676
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.015G113466 [exp]	10.58	0.8236
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G136501 [exp]	13.41	0.8154
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.016G120600 [exp]	15.87	0.8240

Compare expression of checked genes

Potri.004G065200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.