Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	FLS2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46330 1175 / 0 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 602 / 0 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 575 / 0 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G35710 569 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G17230 506 / 2e-160 Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 505 / 3e-159 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G24240 499 / 2e-157 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT2G33170 493 / 4e-155 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 484 / 1e-151 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G63930 481 / 4e-151 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G156200 [exp] 580 / 0 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G075000 [exp] 576 / 0 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.019G129100 [exp] 566 / 0 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.014G195100 [exp] 560 / 1e-179 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120733 [exp] 560 / 4e-179 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120700 [exp] 560 / 4e-179 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.014G195200 [exp] 543 / 5e-173 AT1G35710 715 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.002G258200 [exp] 537 / 8e-171 AT4G08850 674 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.011G068500 [exp] 531 / 2e-169 AT5G46330 505 / 1e-159 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023323 [exp] 1288 / 0 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038488 [exp] 838 / 0 AT5G46330 726 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10036251 [exp] 571 / 0 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10011386 [exp] 517 / 4e-163 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10039030 [exp] 514 / 6e-163 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1) Lus10008849 [exp] 511 / 2e-161 AT1G73080 648 / 0.0 PEP1 receptor 1 (.1) Lus10003612 [exp] 505 / 1e-159 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10038392 [exp] 495 / 4e-155 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10011756 [exp] 492 / 1e-154 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10023677 [exp] 479 / 2e-150 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.004G065400.1 pacid=42794554 polypeptide=Potri.004G065400.1.p locus=Potri.004G065400 ID=Potri.004G065400.1.v4.1 annot-version=v4.1 ATGGTGTCTCGAAATGTTTTTATTTTACACACTTTCATCTTCTGTTCTGTTCTGCTTACTGCTGCTCAATCTGCAGAACCAAGCTTGGAAGCTGAAGTTG AGGCCTTGAAGGCCTTCAAGAATGCCATCAAGCATGACCCTTCAGGAGCACTTGCAGACTGGAGTGAAGCAAGCCATCACTGCAACTGGACTGGTGTTGC CTGTGACCATTCCTTGAATCAAGTCATTGAGATTTCTCTTGGTGGGATGCAGCTCCAAGGCGAGATATCTCCGTTTATTGGCAACATTTCAGGCCTCCAG GTTCTTGATTTAACTTCAAATTCTTTCACAGGGCACATTCCACCTCAGCTGGGACTTTGCTCACAGTTGATTGAACTTGTTCTTTATGACAATTCCTTTT CGGGTCCTATTCCAGTAGAATTAGGAAACCTTAAGAATTTGCAGTCTCTAGATTTAGGTGGCAATTATTTGAATGGAAGCATTCCTGAGAGCCTTTGTGA CTGCACCTCCCTGCTACAGTTTGGTGTGATTTTCAACAATCTGACTGGCACAATACCAGAAAAAATAGGAAACTTGGTTAACCTGCAACTCTTTGTAGCT TATGGGAACAACTTGATTGGTTCAATACCTGTTTCCATTGGAAGGTTGCAAGCTTTGCAAGCTTTAGACCTAAGTCAAAACCACTTGTTTGGGATGATAC CTCGAGAAATAGGGAACTTGTCAAACTTAGAATTTCTTGTCTTGTTTGAGAATTCCCTTGTTGGGAACATCCCTTCTGAACTAGGCCGTTGTGAGAAGCT GGTTGAACTTGACTTGTACATCAATCAGTTGAGTGGAGTCATTCCCCCAGAGCTAGGAAATTTGATCTATTTGGAGAAATTGAGACTGCACAAAAATAGG CTAAATTCAACCATTCCACTGTCCTTGTTCCAGCTGAAATCGTTAACCAATTTAGGACTCTCAAATAATATGTTAACTGGAAGAATAGCTCCTGAAGTAG GATCTTTGAGGTCATTGCTGGTGCTGACTCTGCATTCAAACAATTTCACTGGGGAAATTCCTGCCTCCATAACAAACCTGACAAATTTAACATACTTGTC TTTAGGCTCCAATTTCCTCACGGGAGAGATTCCTTCGAATATCGGAATGCTTTATAATCTGAAGAACCTTAGCCTGCCCGCCAACCTCCTGGAGGGATCC ATACCCACAACTATCACCAATTGCACCCAACTTTTGTATATAGATCTAGCTTTTAACAGATTAACAGGGAAACTTCCACAGGGCCTGGGACAGTTGTACA ATCTGACAAGGCTATCCCTTGGGCCAAATCAAATGTCAGGGGAAATACCAGAAGACCTTTATAATTGCTCCAATCTTATACACTTAAGTTTGGCAGAGAA CAATTTTAGTGGAATGCTAAAACCAGGCATTGGCAAACTCTACAATCTCCAGATTTTGAAATATGGCTTCAATTCACTTGAAGGGCCAATCCCACCAGAG ATTGGAAATTTGACTCAACTGTTCTTTTTAGTACTTTCTGGAAATAGCTTTTCAGGCCATATTCCACCGGAGTTATCCAAGCTTACTCTACTCCAGGGGC TTGGCCTTAATAGCAATGCTTTGGAAGGTCCAATACCTGAGAACATTTTTGAACTGACACGTCTAACTGTTCTCCGGCTGGAGCTCAACAGGTTTACGGG TCCAATTTCTACTTCTATCTCAAAACTGGAAATGCTTTCGGCCTTGGATCTCCATGGAAACGTACTTAATGGGTCTATTCCAACGAGTATGGAACATCTC ATTCGACTAATGTCTCTTGATCTCTCTCACAACCATCTTACAGGGTCAGTCCCTGGATCTGTGATGGCAAAGATGAAAAGCATGCAAATATTTCTAAATT TATCATACAATCTCTTAGATGGTAACATTCCACAAGAGCTTGGAATGTTGGAAGCAGTACAGGCCATTGATCTTTCAAACAACAATCTTTCAGGAATCAT TCCTAAAACACTTGCAGGCTGCAGAAATTTGCTCTCTCTTGATCTTTCAGGAAACAAGCTCTCTGGCTCAATTCCAGCTGAAGCTTTGGTTCAAATGAGC ATGCTTTCTCTCATGAACCTTTCCAGGAATGATTTGAATGGTCAGATTCCCGAAAAGTTGGCAGAACTGAAGCATCTAAGCGCCCTGGACCTTTCTAGAA ATCAGTTGGAGGGCATAATTCCTTATAGCTTTGGAAATCTTTCGAGCTTGAAGCATCTTAACCTGTCTTTCAATCATCTTGAAGGCCGCGTTCCCGAGTC TGGTTTATTCAAAAACATCAGCTCATCTAGTTTGGTTGGAAATCCTGCTCTCTGTGGAACCAAATCTTTGAAGTCCTGCAGCAAGAAGAATTCACATACC TTTTCCAAGAAGACGGTATTTATCTTCCTTGCAATTGGAGTGGTGTCCATATTTTTAGTTCTTTCCGTGGTGATTCCATTATTCCTCCAACGTGCCAAAA AGCATAAAACAACAAGTACCGAGAATATGGAGCCAGAGTTCACTTCAGCACTGAAACTCATTAGGTATGACAGGAACGAAATAGAAAATGCTACAAGTTT CTTCAGTGAAGAAAACATAATCGGCGCCAGCAGTTTGAGCACTGTATACAAGGGTCAATTGGAAGATGGCAAGACTATAGCTGTTAAGCAACTGAATTTT CAGAAGTTCTCTGCAGAATCTGACAAGTGCTTCTACAGAGAAATCAAAACGTTGAGCCAACTTAGGCATAGGAATCTGGTTAAGGTACTTGGCTATGCCT GGGAGAGTGCTAAACTGAAGGTTTTAGTTTTGGAATACATGCAGAATGGGAGCTTGGAGAGTATCATACATAACCCTCAGGTTGATCAGTCATGGTGGAC ACTGTATGAGAGAATCAATGTTTGTGTTTCCATTGCAAGTGCTCTAGAGTACTTGCATTCTGGCTATGACTTTCCAATCGTACACTGTGACTTGAAGCCC TCTAACGTGCTGTTGGATGGTGATTGGGTGGCCCATGTGAGCGACTTTGGAACAGCTCGAATTCTGGGCGTTCACCTGCAGGATGGGAACAGTCTCTCCT CAGCATCAGCCTTTGAAGGCACCATTGGCTATATGGCACCAGAGTTTGCGTACATGAGGAGAGTGACGACTAAAGTAGATGTCTTCAGCTTTGGGATTGT AGTAATGGAGGTCCTCATGAAACGGAGGCCAACAGGACTCACAGACAAGGATGGATTGCCAATCAGCTTGCGTCAACTAGTCGAAAGGGCCCTCGCCAAT GGCATCGATGGACTTCTTCAAGTACTGGACCCAGTGATTACTAAGAATCTCACCAACGAGGAAGAAGCATTGGAGCAGCTCTTTCAAATAGCCTTTTCTT GCACCAATCCAAATCCTGAGGATAGACCTAACATGAATGAGGTGTTGTCTTGCCTTCAGAAGATAAGTGCAAGGTAA
AA sequence Show only first row Show all	>Potri.004G065400.1 pacid=42794554 polypeptide=Potri.004G065400.1.p locus=Potri.004G065400 ID=Potri.004G065400.1.v4.1 annot-version=v4.1 MVSRNVFILHTFIFCSVLLTAAQSAEPSLEAEVEALKAFKNAIKHDPSGALADWSEASHHCNWTGVACDHSLNQVIEISLGGMQLQGEISPFIGNISGLQ VLDLTSNSFTGHIPPQLGLCSQLIELVLYDNSFSGPIPVELGNLKNLQSLDLGGNYLNGSIPESLCDCTSLLQFGVIFNNLTGTIPEKIGNLVNLQLFVA YGNNLIGSIPVSIGRLQALQALDLSQNHLFGMIPREIGNLSNLEFLVLFENSLVGNIPSELGRCEKLVELDLYINQLSGVIPPELGNLIYLEKLRLHKNR LNSTIPLSLFQLKSLTNLGLSNNMLTGRIAPEVGSLRSLLVLTLHSNNFTGEIPASITNLTNLTYLSLGSNFLTGEIPSNIGMLYNLKNLSLPANLLEGS IPTTITNCTQLLYIDLAFNRLTGKLPQGLGQLYNLTRLSLGPNQMSGEIPEDLYNCSNLIHLSLAENNFSGMLKPGIGKLYNLQILKYGFNSLEGPIPPE IGNLTQLFFLVLSGNSFSGHIPPELSKLTLLQGLGLNSNALEGPIPENIFELTRLTVLRLELNRFTGPISTSISKLEMLSALDLHGNVLNGSIPTSMEHL IRLMSLDLSHNHLTGSVPGSVMAKMKSMQIFLNLSYNLLDGNIPQELGMLEAVQAIDLSNNNLSGIIPKTLAGCRNLLSLDLSGNKLSGSIPAEALVQMS MLSLMNLSRNDLNGQIPEKLAELKHLSALDLSRNQLEGIIPYSFGNLSSLKHLNLSFNHLEGRVPESGLFKNISSSSLVGNPALCGTKSLKSCSKKNSHT FSKKTVFIFLAIGVVSIFLVLSVVIPLFLQRAKKHKTTSTENMEPEFTSALKLIRYDRNEIENATSFFSEENIIGASSLSTVYKGQLEDGKTIAVKQLNF QKFSAESDKCFYREIKTLSQLRHRNLVKVLGYAWESAKLKVLVLEYMQNGSLESIIHNPQVDQSWWTLYERINVCVSIASALEYLHSGYDFPIVHCDLKP SNVLLDGDWVAHVSDFGTARILGVHLQDGNSLSSASAFEGTIGYMAPEFAYMRRVTTKVDVFSFGIVVMEVLMKRRPTGLTDKDGLPISLRQLVERALAN GIDGLLQVLDPVITKNLTNEEEALEQLFQIAFSCTNPNPEDRPNMNEVLSCLQKISAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46330		FLS2	FLAGELLIN-SENSITIVE 2, Leucine...		Potri.004G065400 [exp]	0	1	FLS2.2
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Potri.012G097400 [exp]	4.00	0.7472	PPD3.2
AT2G01670		ATNUDT17	nudix hydrolase homolog 17 (.1...		Potri.017G131000 [exp]	23.49	0.7154
AT4G18210		ATPUP10	purine permease 10 (.1)		Potri.001G352100 [exp]	24.97	0.6979
AT5G04590		SIR	sulfite reductase (.1)		Potri.001G257000 [exp]	27.49	0.6505	Pt-SIR.2
AT1G62420			Protein of unknown function (D...		Potri.004G001400 [exp]	28.00	0.6758
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Potri.011G104900 [exp]	28.37	0.6614	Pt-PSCLRR52.52
AT2G41480			Peroxidase superfamily protein...		Potri.016G125000 [exp]	37.38	0.6658
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Potri.006G214700 [exp]	51.24	0.6492
AT5G39080			HXXXD-type acyl-transferase fa...		Potri.017G094700 [exp]	53.44	0.6472
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Potri.005G122200 [exp]	73.28	0.6166

Compare expression of checked genes

Potri.004G065400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.