Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18370 55 / 1e-10 DEGP5, DEG5, HHOA PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) AT5G39830 38 / 0.0002 DEG8, DEGP8 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G129200 [exp] 37 / 0.0004 AT5G39830 595 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Potri.001G348800 [exp] 36 / 0.001 AT3G27925 595 / 0.0 DegP protease 1 (.1) Potri.011G083300 [exp] 0 / 1 AT4G18370 355 / 4e-123 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028120 [exp] 54 / 6e-10 AT4G18370 284 / 4e-94 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Lus10042822 [exp] 53 / 1e-09 AT4G18370 329 / 3e-112 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Lus10008781 [exp] 37 / 0.0005 AT3G27925 641 / 0.0 DegP protease 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G065600.2 pacid=42795376 polypeptide=Potri.004G065600.2.p locus=Potri.004G065600 ID=Potri.004G065600.2.v4.1 annot-version=v4.1 ATGCTGGAGGCAATAGCTTGTACAGGGAAGGCAAGATCATTGGTTTTGTTCCATCTTATTAACTGGCTGTCCTTAAGCAAGGTTTGGAAATGCATGCTGT TTTGTCACCTGCAGGCTGATGTTGAAGGATATGAATTGAAGCCTGTTGCTCTTGGTACTTCTAGGGAATTACATGTGGATCAAAGCTGCTTTGCAATTGG GAATCCTTATGAATATTAA
AA sequence Show only first row Show all	>Potri.004G065600.2 pacid=42795376 polypeptide=Potri.004G065600.2.p locus=Potri.004G065600 ID=Potri.004G065600.2.v4.1 annot-version=v4.1 MLEAIACTGKARSLVLFHLINWLSLSKVWKCMLFCHLQADVEGYELKPVALGTSRELHVDQSCFAIGNPYEY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Potri.004G065600 [exp]	0	1
AT3G03890			FMN binding (.1.2)		Potri.019G035200 [exp]	1.73	0.9322
AT2G35658			unknown protein		Potri.001G152700 [exp]	12.32	0.8928
AT3G19900			unknown protein		Potri.010G169700 [exp]	18.97	0.9154
AT3G10350			P-loop containing nucleoside t...		Potri.010G225100 [exp]	19.54	0.9244
AT3G15580		APG8H, ATG8I	AUTOPHAGY 8I, AUTOPHAGY 8H, Ub...		Potri.002G189450 [exp]	27.85	0.9110
AT2G18710		SCY1	SECY homolog 1 (.1)		Potri.006G175300 [exp]	29.39	0.9162
AT2G32480		ARASP	ARABIDOPSIS SERIN PROTEASE (.1...		Potri.002G228600 [exp]	30.59	0.9131
AT4G36910		CBSX1, CDCP2, L...	LOSS OF THE TIMING OF ET AND J...		Potri.007G046400 [exp]	42.74	0.9111
AT4G31390			Protein kinase superfamily pro...		Potri.006G275600 [exp]	45.29	0.9109
AT1G71480			Nuclear transport factor 2 (NT...		Potri.019G074800 [exp]	51.91	0.8940

Compare expression of checked genes

Potri.004G065600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.