Plant FIBer expression Database

Potri.004G065750 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G27370 37 / 0.0007 CASP3 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G160000
[exp]
77 / 1e-18 AT2G27370 146 / 2e-43 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.004G065750.1 pacid=42795898 polypeptide=Potri.004G065750.1.p locus=Potri.004G065750 ID=Potri.004G065750.1.v4.1 annot-version=v4.1
ATGGCATTTGATGTAACAAGCTTTCTCTCGCTCGGACAAGAACCAAAGGCAGACACAAAAGGAAAAGGCTTTGCGGGTGCTCCTAATCCTACCACAGTCC
CAACAAAAGAAGCCCAGCACCCACGTAAAGGATGGAGAAAAGGCGTCGCCATTTTCGACTTGGTTCTCGAGCTGTCTGCCATTGTCGCTGGTCTTGCTGC
CACTAGCATTACGGATCATACTTTTCCTTTTTTCTCACTCAGTTCTTTCAGTTCCAAGCTCAGTTTAGTGATCTCCCAACTCTCATGTTTTTCGTGGTTG
CTAATGCCATAG
AA sequence
>Potri.004G065750.1 pacid=42795898 polypeptide=Potri.004G065750.1.p locus=Potri.004G065750 ID=Potri.004G065750.1.v4.1 annot-version=v4.1
MAFDVTSFLSLGQEPKADTKGKGFAGAPNPTTVPTKEAQHPRKGWRKGVAIFDLVLELSAIVAGLAATSITDHTFPFFSLSSFSSKLSLVISQLSCFSWL
LMP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.004G065750
[exp]
0 1
Potri.009G026850
[exp]
1.00 0.7678
AT1G15125 S-adenosyl-L-methionine-depend... Potri.008G127000
[exp]
6.16 0.5875
AT1G29660 GDSL-like Lipase/Acylhydrolase... Potri.012G060700
[exp]
6.92 0.7319
AT3G43860 ATGH9A4 glycosyl hydrolase 9A4 (.1) Potri.006G219700
[exp]
8.36 0.7080
Potri.005G022400
[exp]
9.38 0.6389
AT4G38140 RING/U-box superfamily protein... Potri.004G209600
[exp]
15.00 0.6202
AT5G12180 CPK17 calcium-dependent protein kina... Potri.001G274700
[exp]
17.97 0.5955
AT4G24220 5[beta]-StR, 5[... VEIN PATTERNING 1, Δ4,5-s... Potri.009G091950
[exp]
18.97 0.5872
AT5G12060 Plant self-incompatibility pro... Potri.006G170200
[exp]
20.49 0.5594
AT5G63390 O-fucosyltransferase family pr... Potri.015G092600
[exp]
33.43 0.5240

Potri.004G065750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.