Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16220 526 / 0 Protein phosphatase 2C family protein (.1) AT1G79630 513 / 2e-179 Protein phosphatase 2C family protein (.1.2.3) AT3G02750 461 / 4e-159 Protein phosphatase 2C family protein (.1.2.3) AT1G03590 408 / 8e-139 Protein phosphatase 2C family protein (.1) AT4G03415 405 / 7e-138 Protein phosphatase 2C family protein (.1.2) AT5G36250 396 / 2e-134 Protein phosphatase 2C family protein (.1) AT5G01700 303 / 4e-99 Protein phosphatase 2C family protein (.1.2) AT5G27930 300 / 4e-98 Protein phosphatase 2C family protein (.1.2) AT3G05640 299 / 9e-98 Protein phosphatase 2C family protein (.1.2) AT3G16800 273 / 7e-88 Protein phosphatase 2C family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G473300 [exp] 793 / 0 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.019G054200 [exp] 509 / 5e-178 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.013G085500 [exp] 491 / 6e-171 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.019G103100 [exp] 429 / 5e-147 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G144100 [exp] 426 / 7e-146 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.006G105000 [exp] 332 / 6e-109 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2) Potri.016G127900 [exp] 328 / 2e-107 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2) Potri.010G006200 [exp] 316 / 3e-104 AT3G05640 460 / 9e-163 Protein phosphatase 2C family protein (.1.2) Potri.010G006100 [exp] 314 / 2e-103 AT3G05640 451 / 2e-159 Protein phosphatase 2C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000402 [exp] 608 / 0 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10027122 [exp] 601 / 0 AT1G16220 567 / 0.0 Protein phosphatase 2C family protein (.1) Lus10022588 [exp] 418 / 1e-143 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10018570 [exp] 415 / 3e-141 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10039802 [exp] 414 / 8e-141 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10021486 [exp] 407 / 1e-138 AT3G02750 418 / 6e-143 Protein phosphatase 2C family protein (.1.2.3) Lus10031631 [exp] 406 / 5e-138 AT1G03590 600 / 0.0 Protein phosphatase 2C family protein (.1) Lus10033708 [exp] 405 / 6e-138 AT1G03590 593 / 0.0 Protein phosphatase 2C family protein (.1) Lus10041277 [exp] 421 / 1e-135 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10037431 [exp] 419 / 1e-133 AT5G21160 643 / 0.0 LA RNA-binding protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.004G066200.4 pacid=42794063 polypeptide=Potri.004G066200.4.p locus=Potri.004G066200 ID=Potri.004G066200.4.v4.1 annot-version=v4.1 ATGGGATCTTGCTACTCCATCATGGGGGAGAAGAAGAAGTCACCGTCATCAACAACAACAACTGGGAAGAAGAAATCATTCGTGTCATCAGCTACTAATG CTAATGCTGACCCAAGTGTGCTCCTTCATATTCCTGGCAGGTTCGCCACCAACGCTGCCACCAAAATCGGCTGCGTATATACCCAGCAGGGCAAGAAAGG CACCAATCAAGACGCCATGCTCCTCTGGGAGAATTTCAGCTCAACCACATCAAGCGATGCCGTTTTTTGTGGGGTATTTGATGGCCATGGTCCTTATGGT CATTTGGTCGCCAAGAAAGTTCGGGATTCCCTTCCGCTCATAATATCTACTCACTGGAATCCTGCTCAACAATGCTGCCTTTCTGACACTGCAAATGCTC CTGCACCAACTACAAATCCTGAGGACGCTTCTTCCTTAAGTATGGATGATGAATCCTTTGATTCCTTAGACGTTGAGGAAACTGAAACACCCCCAGATAT GTTTCTTCCACTCAAAAAGTCTATATTGAAGGCTTTTAAATTAATGGATAAGGAGTTGAAGTTGCATCCAACAATCGATTGTTTTTGCAGTGGGACGACT GCTGTTACTCTGATCAAGCAGGGCCAAGATCTTGTTATTGGAAATGTTGGTGACTCCAGGGCAGTTCTGGCAACCAGAGACAAAGATGACTCTTTGCTTG CTGTTCAATTGACTGTTGACTTGAAGCCTGATTTACCAAGGGAAGCTGCCAGGATCCAGCAATGTAAAGGAAGGGTCTTTGCATTGCAGGACGAGCCAGA GGTTCCACGTGTATGGTTGCCTAATAATAACTCACCTGGTCTGGCAATGGCTAGAGCTTTTGGGGACTTCTGCTTAAAAGATTTCGGTTTAATTTCTGTT CCGGATGTTTATTATCGCTGCCTTAACGATAGAGATGAATTCATTATTCTTGCCACAGATGGGGTTTGGGATGTCCTCTCAAATAAGGAAGCTGTTGATA TCGTGGCTTCAGCCCCTGGCCGTGCAACAGCAGCCAGGGCTCTTGTAGACTGTGCTGTCCGAGCATGGAGACTTAAATATCCAACATCCAAGACTGATGA TTGTGCAGTTGTATGCCTCTTTCTTGAACATCCATGTGCAGTAAATGGGGAGGTGGAAGAGCAGGATTTGAGAAAGATTCCTATGGAGCCAGGGGAGCAT TTTGCGACTGATGAGAACACTGGTCAATTAGAAACAAAAGAGGATTCTCGTGATCCTATTTTTATGCATTCGGGCACCACACGTAACTCTGACGAGATTG TACCTGTCCCTGAGTTGACAGTGGAAAATCCTTCAGTAATGTGCCAGGGCCAGTCCAAGAGGAGCCTGGCAGAGTGCATTTCAACTTCAGAGGATGAAGA GTGGTCAGCCCTAGAAGGTATTACAAGGGTTAATAGTTTGCTAAGCCTTCCCAGGCTCTTGTCTGGTGACAAAAGAGCAGCCAGTTGGCGAAAATGGGTT TGA
AA sequence Show only first row Show all	>Potri.004G066200.4 pacid=42794063 polypeptide=Potri.004G066200.4.p locus=Potri.004G066200 ID=Potri.004G066200.4.v4.1 annot-version=v4.1 MGSCYSIMGEKKKSPSSTTTTGKKKSFVSSATNANADPSVLLHIPGRFATNAATKIGCVYTQQGKKGTNQDAMLLWENFSSTTSSDAVFCGVFDGHGPYG HLVAKKVRDSLPLIISTHWNPAQQCCLSDTANAPAPTTNPEDASSLSMDDESFDSLDVEETETPPDMFLPLKKSILKAFKLMDKELKLHPTIDCFCSGTT AVTLIKQGQDLVIGNVGDSRAVLATRDKDDSLLAVQLTVDLKPDLPREAARIQQCKGRVFALQDEPEVPRVWLPNNNSPGLAMARAFGDFCLKDFGLISV PDVYYRCLNDRDEFIILATDGVWDVLSNKEAVDIVASAPGRATAARALVDCAVRAWRLKYPTSKTDDCAVVCLFLEHPCAVNGEVEEQDLRKIPMEPGEH FATDENTGQLETKEDSRDPIFMHSGTTRNSDEIVPVPELTVENPSVMCQGQSKRSLAECISTSEDEEWSALEGITRVNSLLSLPRLLSGDKRAASWRKWV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16220			Protein phosphatase 2C family ...		Potri.004G066200 [exp]	0	1
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Potri.008G118300 [exp]	3.16	0.7893	PAN.2
AT1G03370			C2 calcium/lipid-binding and G...		Potri.016G003900 [exp]	7.54	0.8067
AT5G66560			Phototropic-responsive NPH3 fa...		Potri.007G033900 [exp]	9.48	0.7865
AT3G42670		CLSY1, CLSY, CH...	CLASSY 1, CLASSY1, chromatin r...		Potri.008G073500 [exp]	10.39	0.7963
AT1G19100			Histidine kinase-, DNA gyrase ...		Potri.011G144500 [exp]	10.39	0.7722
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G047300 [exp]	10.90	0.7873
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170700 [exp]	13.56	0.7933
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G044200 [exp]	19.18	0.7868
AT2G27510		ATFD3	ferredoxin 3 (.1)		Potri.008G020100 [exp]	27.23	0.7355	Pt-PETF.6
AT5G18960	FAR1_related	FRS12	FAR1-related sequence 12 (.1)		Potri.016G059150 [exp]	29.22	0.7770

Compare expression of checked genes

Potri.004G066200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.