Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02880 302 / 3e-94 Leucine-rich repeat protein kinase family protein (.1) AT5G05160 292 / 2e-90 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT3G08680 287 / 1e-88 Leucine-rich repeat protein kinase family protein (.1.2) AT3G20190 285 / 4e-87 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 283 / 1e-86 Leucine-rich repeat protein kinase family protein (.1.2) AT1G64210 272 / 2e-83 Leucine-rich repeat protein kinase family protein (.1) AT1G10850 259 / 9e-78 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 252 / 5e-75 leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G26730 249 / 4e-74 Leucine-rich repeat protein kinase family protein (.1) AT2G36570 249 / 6e-74 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G154700 [exp] 944 / 0 AT1G48480 309 / 2e-96 receptor-like kinase 1 (.1) Potri.013G158800 [exp] 322 / 1e-101 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 319 / 1e-100 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 309 / 7e-97 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 308 / 3e-96 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G130600 [exp] 293 / 7e-91 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 292 / 2e-90 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G095200 [exp] 290 / 1e-89 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 286 / 4e-88 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040653 [exp] 588 / 0 AT1G68400 331 / 5e-105 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10018255 [exp] 447 / 5e-154 AT2G36570 271 / 4e-85 Leucine-rich repeat protein kinase family protein (.1) Lus10019113 [exp] 323 / 6e-102 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 318 / 3e-100 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017756 [exp] 311 / 1e-97 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035012 [exp] 310 / 5e-97 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 310 / 6e-97 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031350 [exp] 308 / 1e-96 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1) Lus10027568 [exp] 285 / 9e-88 AT4G23740 652 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002299 [exp] 258 / 7e-81 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G066300.4 pacid=42794409 polypeptide=Potri.004G066300.4.p locus=Potri.004G066300 ID=Potri.004G066300.4.v4.1 annot-version=v4.1 ATGGCCCAAAATTGTTGCAAGTCTTGTTTCCTCCCACTGTTCTTCCTTCTTTTCAGCAAGGAGTTCTTTCCTGAAGAAAGAGAAGCGTTGATGCAGATAA GAGATTTGGTCAGTTCTACTTTGGATTTGCATGGAAATTGGACTGGACCCCCTTGTCACAAAAATTCCAGTCAATGGTCAGGCATTACTTGTTCTAATTG GCATGTGGTTGGTCTTGTGCTTGAAGGAGTCCAGCTCACAGGTTCTCTCCCACCTGCCTTTTCACAAAACATTACTTTCTTGGCTAATCTTAGTTTCAGA AACAATTCAATATATGGGCCGCTTCCTAATCTCAGCAATCTTGTGCATTTGGAATCTGTCTTCTTTTCATACAATCGTTTGACTGGTTCAATTCCATCTG AATACATTGAACTGCCAAACTTGAAACAATTGGAGTTGCAACAGAATTATTTAGATGGGGAGATACCGCCTTTTAACCAACCAACACTGACCCTTTTTAA TGTGTCCTACAATCATCTTCAAGGCTCCATTCCTGACACTGATGTCCTTCGGAGGTTCTCAGAGAGCTCCTATGATCATAACTCAAATCTCTGCGGGATT CCATTGGAACCATGCCCAGTTCTGCCTCCTGCTCCACTTGTGCCGCCTCCATCTCCTCCTGTAAGTCCACCACAGAACAAGAAAAGGAAGCTTCCAATTT GGATCATTGCCTTGATTGTGGTTGTAGTAGCTCTTGTTCCGTTGATGGTCATGTTTGTTTTCTTGTGTTGTTATAAGAAGGCACAAGAAGTGGAAACACC AAAAGAACGGCAGGCAGGGGGTGATAGTTCACCAGAGTGGACAGACAAGAAAATGCCGCATTCTCAAAGCACTGAGGATCCTGAAAGAAGAATAGAGTTA CAATTTTTCGACAAGAATATACCTGTTTTTGACTTGGATGATTTACTAAGAGCATCTGCGGAGGTGTTAGGAAAGGGGAAACTTGGGACTACGTACAGTG CAAACCTGGAATCAGGTGCTGTTGTTGCTGTTAAAAGAGTAATGTACATGAACAGCTTGAGCAAGAAGGAATTTATTCAGCAGATGCTGCTGCTGGGAAG GATGAGGCACGAAAACCTTGTGCATATCATCTCCTTTTACTATTCCAAGCAGGAAAAGCTGATTGTCTATGAGTTTGTACCAGATGGAAGTTTATTTGAG CTGTTGCATGAGAATAGAGAAGCTGGTAGAGTCCCTTTGAATTGGGCTGCAAGACTGTCAATAATCAAAGACATAGCGAAGGGTATGGCTTTCCTTCACC AGTCATTACCTTCGCACAAGGCCCCTCATGCCAACCTCAAATCATCTAATGTGTTAATCCACAGAGATCGCCAAAGTTACCATTCTAAGCTCACAAACTA TAGCTTCTTGCCTCTGCTGCCTTCTCGGAAATCATCCGAAAGACTAGCTATTGGCAGGTCACCAGAATTCTGTCAAGGGAAGAAGCTAACACACAAAGCT GATGTATACTGCTTTGGAATCATCCTTTTAGAGGTCATAACTGGGAAGATTCCAGAAGAGACTTCGCCAGCAGGAAACGAAGAAAAAGTGGATGATCTTT CTGAATGGGTTAGAATGGTAGTGAATAATGATTGGTCAACAGACATATTAGATGTAGAGATATTGGCTTCAAGCGCAGGGCATAATGAGATGTTGAAGCT GACAGAGATAGCTCTGCAGTGTACAGATATGGAACCAGAAAAACGACCTAAGATGAGTGAAGTATTGAGAAGGATAGAAGAGATTGATCGAACAAACCAA GAAAATGACTAG
AA sequence Show only first row Show all	>Potri.004G066300.4 pacid=42794409 polypeptide=Potri.004G066300.4.p locus=Potri.004G066300 ID=Potri.004G066300.4.v4.1 annot-version=v4.1 MAQNCCKSCFLPLFFLLFSKEFFPEEREALMQIRDLVSSTLDLHGNWTGPPCHKNSSQWSGITCSNWHVVGLVLEGVQLTGSLPPAFSQNITFLANLSFR NNSIYGPLPNLSNLVHLESVFFSYNRLTGSIPSEYIELPNLKQLELQQNYLDGEIPPFNQPTLTLFNVSYNHLQGSIPDTDVLRRFSESSYDHNSNLCGI PLEPCPVLPPAPLVPPPSPPVSPPQNKKRKLPIWIIALIVVVVALVPLMVMFVFLCCYKKAQEVETPKERQAGGDSSPEWTDKKMPHSQSTEDPERRIEL QFFDKNIPVFDLDDLLRASAEVLGKGKLGTTYSANLESGAVVAVKRVMYMNSLSKKEFIQQMLLLGRMRHENLVHIISFYYSKQEKLIVYEFVPDGSLFE LLHENREAGRVPLNWAARLSIIKDIAKGMAFLHQSLPSHKAPHANLKSSNVLIHRDRQSYHSKLTNYSFLPLLPSRKSSERLAIGRSPEFCQGKKLTHKA DVYCFGIILLEVITGKIPEETSPAGNEEKVDDLSEWVRMVVNNDWSTDILDVEILASSAGHNEMLKLTEIALQCTDMEPEKRPKMSEVLRRIEEIDRTNQ END

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02880			Leucine-rich repeat protein ki...		Potri.004G066300 [exp]	0	1
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Potri.002G047875 [exp]	2.00	0.8894
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Potri.003G111600 [exp]	3.46	0.8586
AT1G61290		ATSYP124, SYP12...	syntaxin of plants 124 (.1)		Potri.011G043700 [exp]	11.74	0.7653
AT4G21780			unknown protein		Potri.011G000400 [exp]	14.07	0.7956
AT3G55640			Mitochondrial substrate carrie...		Potri.008G060900 [exp]	14.69	0.8126
AT1G28240			Protein of unknown function (D...		Potri.011G053000 [exp]	28.98	0.8092
AT2G28370			Uncharacterised protein family...		Potri.004G211400 [exp]	35.07	0.8012
AT5G58100			unknown protein		Potri.006G080700 [exp]	37.14	0.7821
AT3G15220			Protein kinase superfamily pro...		Potri.011G116300 [exp]	38.60	0.8105
AT1G27700			Syntaxin/t-SNARE family protei...		Potri.017G125000 [exp]	40.62	0.7512

Compare expression of checked genes

Potri.004G066300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.