Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26790 521 / 6e-174 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G13800 453 / 8e-147 FAC19 embryonic factor 19, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 250 / 6e-72 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 238 / 2e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63150 238 / 2e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 237 / 4e-68 RPF2 rna processing factor 2 (.1) AT1G63130 237 / 4e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59900 239 / 7e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 233 / 2e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G28010 233 / 4e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G069600 [exp] 266 / 4e-78 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 261 / 3e-74 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G105700 [exp] 250 / 3e-71 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G046000 [exp] 247 / 3e-71 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G236800 [exp] 251 / 5e-71 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G249800 [exp] 246 / 8e-70 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.001G139300 [exp] 242 / 8e-69 AT5G01110 275 / 1e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G276500 [exp] 240 / 3e-68 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 237 / 4e-67 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005692 [exp] 518 / 5e-173 AT2G26790 469 / 4e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020299 [exp] 295 / 1e-91 AT2G26790 251 / 2e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020294 [exp] 267 / 1e-81 AT2G26790 207 / 9e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000909 [exp] 273 / 1e-79 AT1G74580 270 / 3e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 268 / 1e-77 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004570 [exp] 259 / 2e-74 AT5G59900 290 / 9e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 253 / 6e-73 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 252 / 2e-72 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 251 / 7e-71 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017684 [exp] 241 / 9e-69 AT4G28010 596 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.004G066600.2 pacid=42795238 polypeptide=Potri.004G066600.2.p locus=Potri.004G066600 ID=Potri.004G066600.2.v4.1 annot-version=v4.1 ATGGGTGGGCAGTGTGCACACTTCGGGACACGAGTAATGAGGAGTAGTAAACTCTTGACCCACTTCACCTCTAATTCCAGATCCTTTTCCACTGCATCAT TTGCTGGCTTGACCAGCACCAGCACTAGCACCACTCCCTCTGCTAATAACCACACAGACCCCGCAAAAGATGATGACCAACAACAGCCATTACAATCACA CAAGATAGTTGATACCTTATACAACCTTAAGAATCAGCCTCACCTTGCTTTCTCCATCTTTTCCCACCTCAAAAACCCCGACATCCCTGCCTATGCTGCC ATCATTCGAATCCTTTGTCATTGGGGTCTCCACAAGATGCTCCACTCCATTTTCCTTCATCTTCACCAAAATAACAACGACTTTACTTCTTTTGATATTT CCCATTTGCTTGACACGCTCTCTCTCCCTCATCATATTGACATTGATCTTGAAAAGGAGGACACTGTGAAGCATCGCTCTTCTTTCTTGATCCAAGTCTA TGATGCCTTGGTCAAGTCCTATGTCACTGCAGGCATGCTTGATGAGGCTATCAATGCTTTATTTCAGATCAAAAGGCGCGGATTCCTGCCCCATATTTTC ACCTTTAACTATCTCATGAACAAATTGATTGCAAATGGTAAAGTGGATGCGGCTTTGGCCATTTACAAGCAGTTGAAGAGTTTGGGTTTGAACCCCAATG ACTACACCTATTCTATCATCATAAAGGCCTTTTGCAGAAAGGGCAGTTTAGTGGAGGCCTCGAATGTCTTTCAGGAGATGGAACTTTGTGGGGTCATTCC TAATGCTTATGCTTACACGACTTATATTGAAGGACTCTGTGCAAATCAGAGGTCAGACTTCGGATATCAGGTGCTTCAAGCGTGGAAAGAAGGCAACATT CCTATTGATGTGTATGCTTATGTGGCTGTAATTCGTGGATTTTGTAATGAGATGAAAATGGACCGAGCAGAGGTTGTCTTGGGAGACATGGAAAAACAAG AGTTGATTTCTGATGCGCGTTGCTATAGTGAATTGATTCGTGGATATTGCAAGGCTGGGGATCTTTCGAAAGCCTTGGCACTCCACAATGACATGGAATC AAAAGGTATCAAAACAAATTGTGTCATTGTCAGCACAATTCTCCAATACTTTTGTGAGAAGGGAATGCATTCCCAAGTGGTGGAAGAATTTAAAAGATTT AAGGATTTAAGAATTTTTCTAGATGAGGTTTCATACAACATTGTGGTTGATGCTTTATGCAAACTAGAGAAAGTGGATCAAGCTGTAGCATTGCTGGATG AAATGAAGGGTAAGCAAATGGATATGGACATTATGCACTACACAACTCTAATAAATGGGTATTGTCACGTAGGAAAGCTGGTTGATGCATTTAGGGTATT TGAGGAAATGGAAGGAAAGGGTTTGGAGCCAGATGTTGTCACTTTCAACATACTTCTTGCTGCCTTTTCTAGGAGAGGCCTTGCAAACGAGGCGCTTAAG CTCTATGAATATATGAAGTCACAGGATCTAAAACCTAATGCTATTACACACAATGTGATGATTGAAGGTTTATGTATTGGAGGCAAAGTGACTGAAGCTG AAGCATTTTTCTGTAACATGGAGGATAAGAGTATAGATAATTATGGTGCCATGATTACTGGGTACTGTGAGGCTAAACATACTGAAAAGGCCTCTGAACT TTTCTTTGAACTTTCAGAACGGGGTCTTCTAATGGATAGAGGTTATATCTATAAGCTACTTGAAAAACTCTGTGAGGAAGGTGAAAAGGATAGAGCTCTT TGGTTGCTTAAGACAATGTTGGATTTGAATATGGAACCTAGCAAAGACATGTATGGTAAAGTCATTACTGCTTGTTATCGGGCTGGAGATATGAGAAATG CAGAGGCAGTTTTCGACATTTTACGTAAGAGTGGATTAACTCCTGACATTTTTACCTACACAACAATGATAAATGTTTGTTGCAGACAGAATCGCTTGTC GGAAGCCCGCAATCTTTTCCAGGATATGAAGCACAGAGGAATTAAGCCTGATCTAGTTACTTTTACTGTTTTGCTGGATGGACATTTAAAGAGAGTACAT TCTGAAGCATTTGCAAGGAAAAGAAAGGAAGTAAATTTGGCTGCTTCAAATATTTGGAAAGAAATGCAGAATACAGAAATCAGACCAGATGTTATTTGTT ACACAGCTTTGATTGATGGGCATTGTAAGGTAGATAGACTTGAGGATGCCATAGGCCTCTATGATGAAATGATGTATAGAGGAGTAGAACCTGATAGAGC AACGTGCACAGCTCTTCTGTCTGGCTGTCGTAACAGGGGAGATGTTGATATGGTACTTACAAAACTGAACCTTATTAATCTTACATCTGTCAAGGAGATG TAA
AA sequence Show only first row Show all	>Potri.004G066600.2 pacid=42795238 polypeptide=Potri.004G066600.2.p locus=Potri.004G066600 ID=Potri.004G066600.2.v4.1 annot-version=v4.1 MGGQCAHFGTRVMRSSKLLTHFTSNSRSFSTASFAGLTSTSTSTTPSANNHTDPAKDDDQQQPLQSHKIVDTLYNLKNQPHLAFSIFSHLKNPDIPAYAA IIRILCHWGLHKMLHSIFLHLHQNNNDFTSFDISHLLDTLSLPHHIDIDLEKEDTVKHRSSFLIQVYDALVKSYVTAGMLDEAINALFQIKRRGFLPHIF TFNYLMNKLIANGKVDAALAIYKQLKSLGLNPNDYTYSIIIKAFCRKGSLVEASNVFQEMELCGVIPNAYAYTTYIEGLCANQRSDFGYQVLQAWKEGNI PIDVYAYVAVIRGFCNEMKMDRAEVVLGDMEKQELISDARCYSELIRGYCKAGDLSKALALHNDMESKGIKTNCVIVSTILQYFCEKGMHSQVVEEFKRF KDLRIFLDEVSYNIVVDALCKLEKVDQAVALLDEMKGKQMDMDIMHYTTLINGYCHVGKLVDAFRVFEEMEGKGLEPDVVTFNILLAAFSRRGLANEALK LYEYMKSQDLKPNAITHNVMIEGLCIGGKVTEAEAFFCNMEDKSIDNYGAMITGYCEAKHTEKASELFFELSERGLLMDRGYIYKLLEKLCEEGEKDRAL WLLKTMLDLNMEPSKDMYGKVITACYRAGDMRNAEAVFDILRKSGLTPDIFTYTTMINVCCRQNRLSEARNLFQDMKHRGIKPDLVTFTVLLDGHLKRVH SEAFARKRKEVNLAASNIWKEMQNTEIRPDVICYTALIDGHCKVDRLEDAIGLYDEMMYRGVEPDRATCTALLSGCRNRGDVDMVLTKLNLINLTSVKEM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26790			Pentatricopeptide repeat (PPR)...		Potri.004G066600 [exp]	0	1
AT1G21170		SEC5B	Exocyst complex component SEC5...		Potri.005G191500 [exp]	2.00	0.8231	SEC5.1
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.013G048500 [exp]	3.46	0.8094	CHR923
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.019G021500 [exp]	6.32	0.7909
AT5G11850			Protein kinase superfamily pro...		Potri.018G053800 [exp]	6.92	0.7677
AT2G19390			unknown protein		Potri.018G056400 [exp]	8.48	0.7905
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Potri.016G043900 [exp]	10.67	0.7596
AT1G77600			ARM repeat superfamily protein...		Potri.002G084300 [exp]	10.95	0.7480
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.016G064100 [exp]	16.49	0.7619	Pt-UBP12.1
AT1G58060			RNA helicase family protein (....		Potri.004G222900 [exp]	21.35	0.7524
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.008G106800 [exp]	22.44	0.7512

Compare expression of checked genes

Potri.004G066600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.