Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73380 421 / 2e-144 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031316 [exp] 425 / 9e-146 AT1G73380 395 / 7e-135 unknown protein Lus10031887 [exp] 417 / 1e-142 AT1G73380 387 / 8e-132 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [poplar] [flax] PIN PF07000 [poplar] [flax] DUF1308 Protein of unknown function (DUF1308)
Representative CDS sequence Show only first row Show all	>Potri.004G067200.1 pacid=42795564 polypeptide=Potri.004G067200.1.p locus=Potri.004G067200 ID=Potri.004G067200.1.v4.1 annot-version=v4.1 ATGATGGAGCAAGTAGAAGCAGCAAGAAAGAGATGCTCAAGAGTCATTGACACCATACACAAATTACCTTCTCAAACCAACATCACTGAATCATGCAAAC GCACTCTCCTCAAATTAGCCCAATCTGAGCTCCATTTCCTCTCCTCTCGCTCCACATCTACCCCCCACCACACGCCCCTCAGTGTTAATATTGGGCACTT AGAGGCTGTGATTCACATTCTACAACAACCCTGTATAACTGGAGTTTCACGGGTTTGCAAGCCAATTCCTTCATCACTTCCAAATAGGAAAAAGATTGAA TCTCCTACAAAGAATGCGGTTCATGTTGATATTGTCTGTACTCTTAATAAAAACCCAGTTTGGATTATTGTTTCTGATAGGAACCCAAGATATGTTTCTT GGTTTAGAGATGGTAAAAGTAGTAAGGGCTTAAAATTTAGACTTGAACAAGTTTTGGGTGCTGCTCAATCTACTCAGATAATGAAACCTTGCTCTATTGT TTTGTTTTTCTCACACGGGATTAGTGATTTTGTTAACGAGAAGCTTAGAGAAGAATTTGGGGCATGGCAGCTTGGATTGGAGTTTGCTTTGTTTGATTTT GATTTATGTGAGGAATTAGAAGGTGGTGAATGGATTAATGTGGTTGCAAATGCAAGGTCATTTCAAGAGGCATGTGTTTTTGAAATCAAGGTTGGTGGTA CAAAGGAAAATACAGTTTTGGGTTCTAAATATGGGGTTGAGAGGTCATTGAGTCTTAATCCTACTGGGCTGGAGATGATGGAAGAGGTTACAAAAGAAAA CTTGGATGATGGTTTTGATTCTCTTATTTCGGAGATGAAGTTGTCATTGATGAAAGTTAAAAGTGTGGATGTTGTTGGGCCGGGGGATTTCATTGGAGAT GATGATGGTGATGATTTTATAAATCTTGATACAACAGCCTTAATTGCAATTGTATCAGGAAATAGCAATGGTTGTACTGAGAAACTTTTGGCTACACCAG AGGATGAATTAAGGAAGCGATTTAAAGGAAATTATGAGTTTGTGATTGTACAGGTCAAATCTGAAATTCAGAATCCAATACTTGCAGAGATGGCTGGTGT TATACAAGGAAAGAGAGGCATAATATGTGAAAGTGTTCTTTCAGAGTTTAAACAGTTGGTATCAATGTGTGGAGGGCCTAATGAGAAGCTTAGAGCGGAT AAAATACTGAAATGCCTTATGGTTGTGCCGGATAGTCCTTCAGAACGCATGATGGGCGTCCCAACAACAAGAAAGTTGGCATTGAAGAACAAGGTCGTTT TTGGGACTGGTGACCATTGGCGTGCTCCGACTTTAACAGCAAATATGGCATTTGTGCGAGCAGTTTCACAGACTGGGATGCCTCTGTTCACCATCGAGCA TAGACCAAGGGCCTTAACTGGTGATTAG
AA sequence Show only first row Show all	>Potri.004G067200.1 pacid=42795564 polypeptide=Potri.004G067200.1.p locus=Potri.004G067200 ID=Potri.004G067200.1.v4.1 annot-version=v4.1 MMEQVEAARKRCSRVIDTIHKLPSQTNITESCKRTLLKLAQSELHFLSSRSTSTPHHTPLSVNIGHLEAVIHILQQPCITGVSRVCKPIPSSLPNRKKIE SPTKNAVHVDIVCTLNKNPVWIIVSDRNPRYVSWFRDGKSSKGLKFRLEQVLGAAQSTQIMKPCSIVLFFSHGISDFVNEKLREEFGAWQLGLEFALFDF DLCEELEGGEWINVVANARSFQEACVFEIKVGGTKENTVLGSKYGVERSLSLNPTGLEMMEEVTKENLDDGFDSLISEMKLSLMKVKSVDVVGPGDFIGD DDGDDFINLDTTALIAIVSGNSNGCTEKLLATPEDELRKRFKGNYEFVIVQVKSEIQNPILAEMAGVIQGKRGIICESVLSEFKQLVSMCGGPNEKLRAD KILKCLMVVPDSPSERMMGVPTTRKLALKNKVVFGTGDHWRAPTLTANMAFVRAVSQTGMPLFTIEHRPRALTGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73380			unknown protein		Potri.004G067200 [exp]	0	1
AT5G46720			AIG2-like (avirulence induced ...		Potri.003G092600 [exp]	1.00	0.9159
AT3G12130	C3HZnF		KH domain-containing protein /...		Potri.006G191900 [exp]	4.00	0.8946
AT5G41960			unknown protein		Potri.003G146100 [exp]	4.00	0.8795
AT2G41000			Chaperone DnaJ-domain superfam...		Potri.006G024700 [exp]	11.04	0.8989
AT2G30780			Tetratricopeptide repeat (TPR)...		Potri.006G243000 [exp]	15.09	0.8603
AT3G07440			unknown protein		Potri.002G250500 [exp]	16.30	0.8516
AT5G05710			Pleckstrin homology (PH) domai...		Potri.010G190500 [exp]	16.88	0.8892
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Potri.001G258000 [exp]	18.33	0.8571
AT4G12240	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.003G114700 [exp]	21.21	0.8479
AT5G22080			Chaperone DnaJ-domain superfam...		Potri.001G215800 [exp]	23.81	0.8367

Compare expression of checked genes

Potri.004G067200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.