Plant FIBer expression Database

Potri.004G067400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73390 647 / 0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
AT1G17940 611 / 0 Endosomal targeting BRO1-like domain-containing protein (.1)
AT5G14020 244 / 1e-76 Endosomal targeting BRO1-like domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G154200
[exp]
644 / 0 AT1G73390 563 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
Potri.017G062000
[exp]
283 / 8e-92 AT5G14020 524 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1)
Potri.001G323600
[exp]
273 / 1e-87 AT5G14020 521 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031881
[exp]
692 / 0 AT1G73390 704 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
Lus10031313
[exp]
676 / 0 AT1G73390 690 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
Lus10042289
[exp]
659 / 0 AT1G73390 686 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
Lus10026368
[exp]
587 / 0 AT1G73390 613 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
Lus10012563
[exp]
301 / 5e-99 AT5G14020 486 / 9e-172 Endosomal targeting BRO1-like domain-containing protein (.1)
Lus10041527
[exp]
301 / 8e-99 AT5G14020 483 / 6e-171 Endosomal targeting BRO1-like domain-containing protein (.1)
Lus10035167
[exp]
287 / 2e-93 AT5G14020 497 / 4e-176 Endosomal targeting BRO1-like domain-containing protein (.1)
Lus10031997
[exp]
280 / 1e-90 AT5G14020 504 / 9e-179 Endosomal targeting BRO1-like domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03097 BRO1 BRO1-like domain
Representative CDS sequence
>Potri.004G067400.3 pacid=42794282 polypeptide=Potri.004G067400.3.p locus=Potri.004G067400 ID=Potri.004G067400.3.v4.1 annot-version=v4.1
ATGGGATGCCTGGTGTCTACTCCGCAGGATTCGGGTGGAAATCGAAGGAGACCTGGTAGTATAGGGGATGTGTCTGTTTATGTACCTGGTTTTCGGATAC
CTAAGCCTGTTGATTTCTCTCTGTCACTTGGTGATCATTTGCCGAAGAATTTAGTGAAAAGCCTATCTGCTTTAAGAACTCGTATCGTAGTTATGGCTGG
CCAAGAAGCACCAACAGTCTCAAGAACAAGAAGAAAAAGTGCTACACAACATGGAGGTTCAACATTGGCCGATCTTCATCAGGCTCTTGAAGATTACTTG
CCTGTTCTGTTGGGATTAGTTAAAGATGGAAGCCAGCTACAACACAATGTACAATTTGTGTGGATGAATCAAGAGGATGAAGCAGAGGAAACAGCGATTT
CTAATGCATGGTATGAGGTGTTGTCAGTTTTGCACTTGATGGCAATGCTATCATTATCACAGGCCAACTTGTTGCTTCTTCCAAGAACATCTTCTGATGG
TTACCAGCCAAAAGTATCTGAAGAGAGCAGGCGAGCATCAATTGATATTTTCTTAAAGGCTGCAGGATATCTGGATTGTGCTGTCCAGAATGTGCTCCCA
CAATTACCTAATCCATTAAGGAAAGAACTGCCAGTGGACCTTGCTGAAGGTGTTCTTAGAGCACTTTGCCTTCAAGCATTAGGGCAGAGTGTTGACATCC
AACTAGGAATGGCAATCGATAGTGCCAAAGCTACTCTTGCAGTGAAGCGAAGGCTTGCTTGTGAGATGGTAAAGTACTGGCAGCAGGCTCAAGATAATAT
AATGAATCTTCCATTAGCAAATGGTTGGGGGGAGAAGCACCGACTCTTAATAGAGTGGAAATATGTGGAAGCAAAGGCTGCAGCATACTATTATCATGGC
TTAATCCTTGATGAGGGGAACACAGAGAAGTCTCATGGGATGGCTGTAGCTGCCTTGCAAGCTGCAGATGAGTATTTTAAAGAAAGTAAGAGGGCATGTG
AGGCATTCAATGCAGCTTCTCCATTGTCAAGAAAACCGCTGCTTTGGGGAACCATGAAATATCTCTCTGACAAAATTCCAAAAGATACTTCTAGCAAAGT
GCGGATAAACCGCGATCTATACTCCTATGAAAAAATCATGGAGACAGCACCAACGTTGCCTGATTTTGCTTTGGCGCTGAAACCTGATGACTTTCAGCTC
CCTCCAGCTGACTCTTCCTGGAACGAGGAGAATGTAGTTGCTGGACAAGCCAGTTCCAACCATCTGAGGAGCGAGTGA
AA sequence
>Potri.004G067400.3 pacid=42794282 polypeptide=Potri.004G067400.3.p locus=Potri.004G067400 ID=Potri.004G067400.3.v4.1 annot-version=v4.1
MGCLVSTPQDSGGNRRRPGSIGDVSVYVPGFRIPKPVDFSLSLGDHLPKNLVKSLSALRTRIVVMAGQEAPTVSRTRRKSATQHGGSTLADLHQALEDYL
PVLLGLVKDGSQLQHNVQFVWMNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSSDGYQPKVSEESRRASIDIFLKAAGYLDCAVQNVLP
QLPNPLRKELPVDLAEGVLRALCLQALGQSVDIQLGMAIDSAKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHRLLIEWKYVEAKAAAYYYHG
LILDEGNTEKSHGMAVAALQAADEYFKESKRACEAFNAASPLSRKPLLWGTMKYLSDKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDDFQL
PPADSSWNEENVVAGQASSNHLRSE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G73390 Endosomal targeting BRO1-like ... Potri.004G067400
[exp]
0 1
AT4G01970 RS4, ATSTS raffinose synthase 4, stachyos... Potri.014G118400
[exp]
2.64 0.9044
AT1G75800 Pathogenesis-related thaumatin... Potri.002G020500
[exp]
2.82 0.8851
AT3G23790 AAE16 acyl activating enzyme 16, AMP... Potri.001G321800
[exp]
7.93 0.8964
AT2G20890 PSB29, THF1 THYLAKOID FORMATION1, photosys... Potri.013G148400
[exp]
18.43 0.8628
AT1G72510 Protein of unknown function (D... Potri.006G219100
[exp]
26.49 0.8297
AT4G22920 ATNYE1, SGR1, S... non-yellowing 1 (.1) Potri.003G119600
[exp]
28.87 0.8549
AT1G77380 AAP3, ATAAP3 amino acid permease 3 (.1) Potri.005G181600
[exp]
34.42 0.8254
AT1G20560 AAE1 acyl activating enzyme 1 (.1.2... Potri.005G250700
[exp]
34.78 0.8374
Potri.008G181801
[exp]
35.70 0.8224
AT3G10420 SPD1 SEEDLING PLASTID DEVELOPMENT 1... Potri.010G228600
[exp]
37.41 0.8390

Potri.004G067400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.