Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31270 114 / 8e-27 ATCDT1A, CDT1A, CDT1 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1) AT3G54710 106 / 3e-24 ATCDT1B, CDT1B, CDT1 ARABIDOPSIS HOMOLOG OF YEAST CDT1 B, homolog of yeast CDT1 B homolog of yeast CDT1 B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G222700 [exp] 134 / 5e-33 AT2G31270 357 / 3e-116 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1) Potri.002G040100 [exp] 129 / 1e-31 AT2G31270 339 / 1e-109 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024879 [exp] 123 / 5e-30 AT2G31270 292 / 7e-93 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1) Lus10000708 [exp] 117 / 2e-27 AT2G42450 610 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10040505 [exp] 77 / 2e-14 AT3G54710 171 / 5e-47 ARABIDOPSIS HOMOLOG OF YEAST CDT1 B, homolog of yeast CDT1 B homolog of yeast CDT1 B (.1) Lus10011306 [exp] 75 / 6e-14 AT3G54710 110 / 2e-25 ARABIDOPSIS HOMOLOG OF YEAST CDT1 B, homolog of yeast CDT1 B homolog of yeast CDT1 B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF08839 [poplar] [flax] CDT1 DNA replication factor CDT1 like CL0123 [poplar] [flax] HTH PF16679 [poplar] [flax] CDT1_C DNA replication factor Cdt1 C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.004G067700.7 pacid=42796297 polypeptide=Potri.004G067700.7.p locus=Potri.004G067700 ID=Potri.004G067700.7.v4.1 annot-version=v4.1 ATGGAGCAGAGCGGATGTGAAGAAAGAGGGAGAAAAGTTTCTGATTTGAAGTGTGAAAAGATTGTCCTTTCGGTTGATGAATCAACTCAAAAACCAGAAA CTATTGAAACCCGGAAAAGTTTGGAAGCTAGCATGTTTGCATCTCAAACACCTGCCAAGACGAATGAGCCTTTGCATGCTAAATTCAGAGGAGAACTTGA AATTTTAGAAAGGCACAAGACAATTGTAGAACTCTTTGATAGTATGAATTGTTCATTGAGGTTGCTGGTTATGAGAAAAAAGTCACCTACTTTTCAAAAT ATATCTGCCCAAGTTGAAGTCTTGACTCAAAGGAAGTTCTCTTACGGACATCTTGCACGGATAAAATATTTACTTCCTGAAGCTATACAGATGGATAAGA TTCTTGTGCATGACAAGAAATCCCTGTGCATGAAGTCAGATATGAAAATCGGAGTGCTGTTTGATGTTGTAGAAGGCCACGATGAGGAATCTGATTTTAT TGCTCTGCGCCAAGTTTTCGCTTCCAGGCTTGTTGATTACTTTATAAAGCATCCTGAGGCCTGTGATATCCCACAGGCTATATTACCAGGTCCATTTAAC CAAAGTAAGGAGGCTGCTTTTGAGGACAAGGCTGGTGACCATTCAATGGCTGTCTTTTGTGAGCCCTTTAATGAAATAAGTGAGACCATTGCTCCAGAAC CAATGATCACAGATCAATCAAGAGAATATCTGCCAGCTGCCATTGAAAGTCAGATGTTGTCTACTCCATCCCATCCAGCTGCCATTGAAAGTCAGATGTT GTCTACTCCATCCCATCTACGCCCATCTTTCAATAGGCACTTCTCACAGAAGACTTTTTCTGAAGAGGAGAAGGTGCAACTGTTAGCATCTCCTGTTCCT TCATCAGTTTCACCATCTGGCGATCTGCATAATGAGCATCTCAATGAAGCAAGAACTGCAGAATTTCCTGAGTTTTGTTCTAAATTTAATTTTAGGACTA ACCTGGACATCGAAAGCGAACGAGCAAGACAATTGTGCATCCCATATTCCAAATTTACTTCTTTCAATCCTCTGCCTAGCCAACCAATCAATCCTGAAGT CTCTGCTGATGTGTATACTTCTACCAGCCCCAAGTGTAAACCTGACTCATCTGTTGATAAATTACTGTTAGAAACGCCTGCACAGTCAACTCCAAGGAGA GCAATGCATAGCTCTGATGACCAGCACATGGACACTACTGGCCAAAAGCAGACATTATCTTGTAAGCCTGCAAAAAGGGTGTTAGATTTCTCATACATGG AAGCCGATAAAGGTGCATCAGAATACTATGAATTCTTACATGATAGTAGCACTCAACCTCTTGCTGGCTCTTCTTCACTACTTGAAAAGGTGGAGGGAAG CCTTGCTCACTCATCTGTAGATCAGAAAACCTGTCAATCTGATACAGTGCACCAGCAGATGTCTATTCAGTTGCCTGACCTAGTTTCTCTGGTTCATCAC ATATTCCAGTCAGTTAACTTCTCCCCAATTACAAAGGAGGAACTTGTGCACAAGATAATTCTAGATAGTTTAGATATTGTTGACAGAAGGGAGGTTGAAG AACAGATTGGGATTCTTGAAAAGCGAGTTCCAGATTGGATTTGCAGGTTACCAACACCTAGTGGTGATGTCTTGTACAAGATCAAGAAAATGTCAGACTT GGACACAGTTCAGGCGATGGTCATAGCATAG
AA sequence Show only first row Show all	>Potri.004G067700.7 pacid=42796297 polypeptide=Potri.004G067700.7.p locus=Potri.004G067700 ID=Potri.004G067700.7.v4.1 annot-version=v4.1 MEQSGCEERGRKVSDLKCEKIVLSVDESTQKPETIETRKSLEASMFASQTPAKTNEPLHAKFRGELEILERHKTIVELFDSMNCSLRLLVMRKKSPTFQN ISAQVEVLTQRKFSYGHLARIKYLLPEAIQMDKILVHDKKSLCMKSDMKIGVLFDVVEGHDEESDFIALRQVFASRLVDYFIKHPEACDIPQAILPGPFN QSKEAAFEDKAGDHSMAVFCEPFNEISETIAPEPMITDQSREYLPAAIESQMLSTPSHPAAIESQMLSTPSHLRPSFNRHFSQKTFSEEEKVQLLASPVP SSVSPSGDLHNEHLNEARTAEFPEFCSKFNFRTNLDIESERARQLCIPYSKFTSFNPLPSQPINPEVSADVYTSTSPKCKPDSSVDKLLLETPAQSTPRR AMHSSDDQHMDTTGQKQTLSCKPAKRVLDFSYMEADKGASEYYEFLHDSSTQPLAGSSSLLEKVEGSLAHSSVDQKTCQSDTVHQQMSIQLPDLVSLVHH IFQSVNFSPITKEELVHKIILDSLDIVDRREVEEQIGILEKRVPDWICRLPTPSGDVLYKIKKMSDLDTVQAMVIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31270		ATCDT1A, CDT1A,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Potri.004G067700 [exp]	0	1
AT5G56120			unknown protein		Potri.011G167900 [exp]	17.02	0.7448
AT1G54390		ING2	INHIBITOR OF GROWTH 2, PHD fin...		Potri.013G058800 [exp]	25.29	0.6936
AT2G47580		U1A	spliceosomal protein U1A (.1)		Potri.014G127800 [exp]	35.49	0.6840	Pt-U1A.2
AT3G04830			Protein prenylyltransferase su...		Potri.013G038700 [exp]	38.94	0.6490
AT2G33400			unknown protein		Potri.008G170600 [exp]	40.00	0.6152
AT1G24510			TCP-1/cpn60 chaperonin family ...		Potri.010G051700 [exp]	49.83	0.6281
AT2G34480			Ribosomal protein L18ae/LX fam...		Potri.004G063400 [exp]	54.08	0.6588
AT5G07670			RNI-like superfamily protein (...		Potri.003G107900 [exp]	60.44	0.6074
AT5G10010			unknown protein		Potri.007G082000 [exp]	85.20	0.6052
AT3G07590			Small nuclear ribonucleoprotei...		Potri.002G054800 [exp]	99.34	0.6459

Compare expression of checked genes

Potri.004G067700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.