Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23370 110 / 3e-30 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23350 111 / 4e-30 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G08350 105 / 2e-28 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23360 102 / 3e-27 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT2G22475 96 / 6e-24 GEM GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) AT1G28200 91 / 1e-22 FIP1 FH interacting protein 1 (.1) AT5G13200 86 / 1e-20 GRAM domain family protein (.1) AT4G01600 67 / 1e-13 GRAM domain family protein (.1.2) AT4G40100 58 / 3e-10 GRAM domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G068150 [exp] 360 / 7e-129 AT5G23350 106 / 4e-28 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.004G068200 [exp] 339 / 1e-120 AT5G23350 112 / 3e-30 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.017G152900 [exp] 204 / 2e-67 AT5G23360 97 / 5e-25 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.004G068000 [exp] 151 / 6e-46 AT5G08350 196 / 3e-63 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088400 [exp] 123 / 4e-35 AT5G23370 241 / 8e-81 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.007G075200 [exp] 122 / 1e-34 AT5G08350 240 / 3e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.007G075700 [exp] 120 / 8e-34 AT5G08350 240 / 3e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088300 [exp] 119 / 2e-33 AT5G23370 244 / 4e-82 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088700 [exp] 117 / 1e-32 AT5G08350 234 / 5e-78 GRAM domain-containing protein / ABA-responsive protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017372 [exp] 120 / 1e-33 AT5G08350 238 / 2e-79 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10013445 [exp] 115 / 4e-32 AT5G08350 246 / 1e-82 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10010166 [exp] 115 / 6e-32 AT5G08350 233 / 1e-77 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10010167 [exp] 115 / 6e-32 AT5G08350 247 / 4e-83 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10017373 [exp] 114 / 2e-31 AT5G08350 240 / 3e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10040999 [exp] 112 / 9e-31 AT5G08350 234 / 5e-78 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10040539 [exp] 96 / 4e-24 AT1G28200 338 / 6e-118 FH interacting protein 1 (.1) Lus10000640 [exp] 94 / 3e-23 AT1G28200 333 / 5e-116 FH interacting protein 1 (.1) Lus10010279 [exp] 91 / 3e-22 AT2G22475 196 / 3e-62 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) Lus10025728 [exp] 89 / 5e-21 AT2G22475 304 / 4e-103 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF02893 [poplar] [flax] GRAM GRAM domain
Representative CDS sequence Show only first row Show all	>Potri.004G068100.1 pacid=42796766 polypeptide=Potri.004G068100.1.p locus=Potri.004G068100 ID=Potri.004G068100.1.v4.1 annot-version=v4.1 ATGCATCTTTCCAAGTTCATTTCACGTCCATGTTTTGAGCCCTCAGGAACATCCTCTTCCACTGATCATCATGGTGATGAAGTGGATACAGCTGGGGGAA GCAGGACCTTTGCAAATATAATTCGTGACCGTGTGAGGTCGGTTGGTCTCTCAGACTCAATAAAATTTGAGGCAAAGAAAATTAAAGAAGGTGGGAAGAA GAATATTTTCAAGCAGAAATTTGAGGTCAGAGAAGGGGAAAGGCTATTAAAGGCATCGCATTGCTGTTTATCAACTGAAGCTGGTCCTGTTGCCGGACTT CTCTTTATTTCCACTGAAAAGGTTGCATTCTGCAGTCAGAGATCAGTTACCTTCAAATCTCCAGATGAGCTGCTCGAAGAAACAGATCGAAAGATTGAGA TACCAATAAGGAACATTAGAGGGGTCGACCTGAACGAGTCACAAAAGAAGAAAATGACCATAATCATAGAAGATAGTTCTGAATTCCTGTTTATGGACTT TTTGCGTTACGACAAAGCTCGTCAGAACTTAGAGGAAGCAATTCTATGGCAAAGTTGCCAAGCAGAAGGAAGCTGA
AA sequence Show only first row Show all	>Potri.004G068100.1 pacid=42796766 polypeptide=Potri.004G068100.1.p locus=Potri.004G068100 ID=Potri.004G068100.1.v4.1 annot-version=v4.1 MHLSKFISRPCFEPSGTSSSTDHHGDEVDTAGGSRTFANIIRDRVRSVGLSDSIKFEAKKIKEGGKKNIFKQKFEVREGERLLKASHCCLSTEAGPVAGL LFISTEKVAFCSQRSVTFKSPDELLEETDRKIEIPIRNIRGVDLNESQKKKMTIIIEDSSEFLFMDFLRYDKARQNLEEAILWQSCQAEGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23370			GRAM domain-containing protein...		Potri.004G068100 [exp]	0	1
AT5G23350			GRAM domain-containing protein...		Potri.004G068150 [exp]	1.00	0.9782
AT5G23350			GRAM domain-containing protein...		Potri.004G068200 [exp]	1.41	0.9344
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.011G005300 [exp]	2.82	0.8041
AT5G16820	HSF	ATHSF3, ATHSFA1...	ARABIDOPSIS THALIANA CLASS A H...		Potri.011G051600 [exp]	4.00	0.7979
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.002G176300 [exp]	4.24	0.8114	Pt-ATHB.4
AT4G17070			peptidyl-prolyl cis-trans isom...		Potri.001G150300 [exp]	5.56	0.7196
AT1G27300			unknown protein		Potri.003G170700 [exp]	5.74	0.7739
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Potri.005G105000 [exp]	6.00	0.7795
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Potri.008G106700 [exp]	6.32	0.7758
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.004G026350 [exp]	10.67	0.7421

Compare expression of checked genes

Potri.004G068100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.