Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14940 631 / 0 Major facilitator superfamily protein (.1) AT3G01350 617 / 0 Major facilitator superfamily protein (.1) AT1G22540 379 / 1e-125 Major facilitator superfamily protein (.1) AT1G72125 366 / 1e-120 Major facilitator superfamily protein (.1) AT1G72120 365 / 3e-120 Major facilitator superfamily protein (.1) AT1G72140 358 / 1e-117 Major facilitator superfamily protein (.1) AT1G72130 355 / 2e-116 Major facilitator superfamily protein (.1.2) AT1G22550 350 / 2e-114 Major facilitator superfamily protein (.1) AT3G54450 328 / 6e-106 Major facilitator superfamily protein (.1) AT1G22570 324 / 3e-104 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G152800 [exp] 978 / 0 AT5G14940 645 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106600 [exp] 384 / 2e-127 AT1G22540 666 / 0.0 Major facilitator superfamily protein (.1) Potri.013G107050 [exp] 380 / 8e-126 AT1G22540 670 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079600 [exp] 365 / 5e-120 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106500 [exp] 362 / 9e-119 AT1G22540 644 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079551 [exp] 360 / 3e-118 AT1G22540 662 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079700 [exp] 358 / 4e-117 AT1G22540 547 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106925 [exp] 354 / 6e-116 AT1G22540 605 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106400 [exp] 352 / 3e-115 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005603 [exp] 661 / 0 AT5G14940 592 / 0.0 Major facilitator superfamily protein (.1) Lus10032177 [exp] 659 / 0 AT5G14940 597 / 0.0 Major facilitator superfamily protein (.1) Lus10014510 [exp] 653 / 0 AT5G14940 592 / 0.0 Major facilitator superfamily protein (.1) Lus10039465 [exp] 549 / 0 AT5G14940 489 / 1e-168 Major facilitator superfamily protein (.1) Lus10016932 [exp] 405 / 7e-133 AT1G22540 673 / 0.0 Major facilitator superfamily protein (.1) Lus10008252 [exp] 390 / 9e-130 AT1G22540 641 / 0.0 Major facilitator superfamily protein (.1) Lus10009462 [exp] 363 / 3e-119 AT1G22540 580 / 0.0 Major facilitator superfamily protein (.1) Lus10040099 [exp] 327 / 3e-105 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 327 / 8e-105 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10024156 [exp] 325 / 2e-104 AT3G54450 593 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.004G068500.1 pacid=42795307 polypeptide=Potri.004G068500.1.p locus=Potri.004G068500 ID=Potri.004G068500.1.v4.1 annot-version=v4.1 ATGGCCAGTGGGCAGAAGCCTAAAGGACTGAACAGGTCATGTTTTCTCCTCATAGTGATAGCTGGTATGGAGAGGTTTGCATTCAAAGGGGTGGCATCAA ATTTGGTAACTTATCTTACAGATGTTGTTATGATGAGCAACTCTGCTGCAGCTAAGACAGTAAATAATTGGTGTGGGTTCACATCCATGTTACCACTTCT AGTAGCATCCCTTGCTGATTCTTGGGATCGGTATTCCACCATTCTTAGCTCTTCCTTTCTATATGTTGTGGGACTTGTGGCTTTGACATCAACAGCATTG GCTTGGGCAAGGCATCCCACCAACAATATAAGCTCTTCATACCTGTTTTGGTCACTCTGTTTGATTTCTCTAGGACAAGGTGGATATAACCCGTCTTTAC AAGCCTTTGGAGCAGATCAAATTCCGAACGATGATGAGCTACCGTGCACAAAAGATGAGCAGAAATCAAATAAGAAGAGTTTGTTCTTCCAATGGTGGTA TTTTGGGGTTTGCGGTGGCAGCCTCGCAGGTGTCACAGTCATGTCCTATATCCAAGACACATTTGGCTGGGCACTCGGATTTGCCATTCCCACAATCGCA ATGACAGCATCGATTTTACTATTTTGGTGTGGTAGCAGAATTTATACATATAAACAGGATGACAATATCTCTGAAAGGTCTTCACTGGACATATTTCGAG CCATTAAGGGAGCTGTGTCGAAATTAATGAATAGCAGAATCACCTTGTCAAGCAACAAGCCAGACGTGGCTGAGCTAGAGCTTCAAGAAAAACCTCTTTG TCAGAATTCAGGCAATGCCAAGGCATTGATGGAGAAGCCTGTCGGCGATATTAACTACCTGGTAGAAAATGGAAAAGTAGTATTGAGGCTTTTGCCGATA TGGTCGATGCTCCTAATGTTCGCGGTCATCTTTCAACTGCCTGCCACATTCTTTACCAAACAAGGAATGACAATGAAGAGAAATGTAGGCAGCAGCTTCA AGATCCCACCAGCTACTCTACAAAGTTCTATTACAGTTTCTATAATCCTCCTAATGCCATTTTATGATGCATTGCTGATCCCACTTGCACGACTGATTAC CCGTGACGAAAAAGGTATCAGTGTGACTGAAAGAATGGGAATTGGGATGGTCCTATCTATCATAGCAATGGCCATAGCTGCTCTTGTCGAAACAAAGAGA CTCGAAATCGGACAAAAGATGGAAGTTGTTGATCAGAAAATGGAAACCGAAGTTCCATTAAGCATATTTTGGTTGCTACCTCAGTACATCCTGCTAGGCA TTTCGGATATCTTCACTGTTGTAGGGATGCAAGAGTTTTTCTACAGTGAAGTTCCTGTCAGAATGAGAACAATGGGAATTGCACTGTATACTAGTGTATT TGGAGTGGGAAGCTTCTTGAGTGCCCTATTGATCTCGCTCGTTGAATATTTTACATCTTCAACAGGGGGCAAGAGCTGGTTCTCTGATGACATGAGAGAA GCCCGTCTAGACAAATACTACTGGCTTCTAGCCTTGTTAAGTGTTCTCAGCTTGATATTTTATGTCGTTTTCTGCAAATGTTATGTAAGCAGGAGCAGCG ATTTGGATAATGAGAAGTCATAG
AA sequence Show only first row Show all	>Potri.004G068500.1 pacid=42795307 polypeptide=Potri.004G068500.1.p locus=Potri.004G068500 ID=Potri.004G068500.1.v4.1 annot-version=v4.1 MASGQKPKGLNRSCFLLIVIAGMERFAFKGVASNLVTYLTDVVMMSNSAAAKTVNNWCGFTSMLPLLVASLADSWDRYSTILSSSFLYVVGLVALTSTAL AWARHPTNNISSSYLFWSLCLISLGQGGYNPSLQAFGADQIPNDDELPCTKDEQKSNKKSLFFQWWYFGVCGGSLAGVTVMSYIQDTFGWALGFAIPTIA MTASILLFWCGSRIYTYKQDDNISERSSLDIFRAIKGAVSKLMNSRITLSSNKPDVAELELQEKPLCQNSGNAKALMEKPVGDINYLVENGKVVLRLLPI WSMLLMFAVIFQLPATFFTKQGMTMKRNVGSSFKIPPATLQSSITVSIILLMPFYDALLIPLARLITRDEKGISVTERMGIGMVLSIIAMAIAALVETKR LEIGQKMEVVDQKMETEVPLSIFWLLPQYILLGISDIFTVVGMQEFFYSEVPVRMRTMGIALYTSVFGVGSFLSALLISLVEYFTSSTGGKSWFSDDMRE ARLDKYYWLLALLSVLSLIFYVVFCKCYVSRSSDLDNEKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14940			Major facilitator superfamily ...		Potri.004G068500 [exp]	0	1
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Potri.009G093300 [exp]	1.00	0.8402
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Potri.014G130300 [exp]	2.44	0.7836
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Potri.001G298700 [exp]	3.16	0.7900
AT1G04400		FHA, AT-PHH1, C...	cryptochrome 2 (.1.2)		Potri.010G071200 [exp]	3.87	0.7990
AT3G08640			Protein of unknown function (D...		Potri.006G111300 [exp]	5.09	0.7633
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.017G074000 [exp]	6.63	0.8053
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025500 [exp]	8.94	0.7938
AT2G23260		UGT84B1	UDP-glucosyl transferase 84B1 ...		Potri.009G095500 [exp]	9.79	0.7653	ZOG1.18
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.011G155600 [exp]	11.48	0.7664	CYP716C1
AT1G54200			unknown protein		Potri.001G170500 [exp]	11.74	0.7394

Compare expression of checked genes

Potri.004G068500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.