Plant FIBer expression Database

Potri.004G068600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021547
[exp]
70 / 4e-15 AT3G06670 49 / 1e-06 binding (.1.2)
PFAM info
Representative CDS sequence
>Potri.004G068600.2 pacid=42794564 polypeptide=Potri.004G068600.2.p locus=Potri.004G068600 ID=Potri.004G068600.2.v4.1 annot-version=v4.1
ATGAACTGCAGCATTCCATTTCGCTCTTCACCACTCCTTCCCTTACTTTCAAGCCCCGTACAGAAACCTCAATGGAAGGCACAGAGACTACTTTGGTCTT
CTAGCAAAGAGCCTGCTAGAATTGCTAAGCATAACCAAAAAATGACAGCAAGAACAAGAGCCGTTGCTGAATCCCTCATTCTTGGAGTCGCTTCTGAACC
TAGACCTCGCGATGTATCAGTTCTCCTACAAACAGGTGCTGTGCTTCTGCTAGCGTATGGGATAGCCAATTTCATCTTTCCAGCTTTCATCTCCGATTAC
TATGAATTTGACAAGGTGAGTGAAGAAGACATAAAGCCTAATGATGCTGCTGATCCCTCGGATGAAGCGGCTGATCCCTCGGACGACGAGGCTGATCCCT
CGGATGATGAGTGA
AA sequence
>Potri.004G068600.2 pacid=42794564 polypeptide=Potri.004G068600.2.p locus=Potri.004G068600 ID=Potri.004G068600.2.v4.1 annot-version=v4.1
MNCSIPFRSSPLLPLLSSPVQKPQWKAQRLLWSSSKEPARIAKHNQKMTARTRAVAESLILGVASEPRPRDVSVLLQTGAVLLLAYGIANFIFPAFISDY
YEFDKVSEEDIKPNDAADPSDEAADPSDDEADPSDDE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.004G068600
[exp]
0 1
AT4G01150 unknown protein Potri.014G093900
[exp]
1.73 0.9876 CAM2.1
AT1G49975 unknown protein Potri.001G292000
[exp]
2.44 0.9830
AT1G78995 unknown protein Potri.007G003600
[exp]
2.82 0.9798
AT4G12800 PSAL photosystem I subunit l (.1) Potri.014G175600
[exp]
4.58 0.9826 PSAL.2
AT1G31330 PSAF photosystem I subunit F (.1) Potri.001G081500
[exp]
5.47 0.9763
AT2G20260 PSAE-2 photosystem I subunit E-2 (.1) Potri.002G253800
[exp]
7.74 0.9779 PSAE1.1
AT1G32470 Single hybrid motif superfamil... Potri.001G144800
[exp]
7.93 0.9743 gdcH4,GDCH.2
AT1G19150 LHCA2*1, LHCA2*... photosystem I light harvesting... Potri.006G139600
[exp]
11.83 0.9761 Lhca6,Pt-LHCA2*1.1
AT1G68010 ATHPR1, HPR hydroxypyruvate reductase (.1.... Potri.004G175800
[exp]
12.32 0.9747 Pt-HPR.1
AT1G66840 PMI2, WEB2 WEAK CHLOROPLAST MOVEMENT UNDE... Potri.017G118900
[exp]
13.03 0.9685

Potri.004G068600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.