Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73210 98 / 6e-22 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G17830 94 / 3e-20 Protein of unknown function (DUF789) (.1) AT1G03610 88 / 1e-18 Protein of unknown function (DUF789) (.1) AT5G49220 88 / 5e-18 Protein of unknown function (DUF789) (.1) AT1G15030 85 / 3e-17 Protein of unknown function (DUF789) (.1) AT2G01260 85 / 4e-17 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) AT4G03420 82 / 2e-16 Protein of unknown function (DUF789) (.1) AT4G16100 80 / 2e-15 Protein of unknown function (DUF789) (.1) AT4G28150 75 / 3e-14 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT5G23380 71 / 7e-13 Protein of unknown function (DUF789) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G152601 [exp] 1642 / 0 AT1G03610 95 / 9e-21 Protein of unknown function (DUF789) (.1) Potri.013G149400 [exp] 254 / 2e-71 AT1G15030 82 / 2e-16 Protein of unknown function (DUF789) (.1) Potri.019G119100 [exp] 225 / 2e-65 AT2G01260 84 / 1e-17 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.017G151740 [exp] 107 / 5e-26 ND / Potri.013G144000 [exp] 100 / 2e-22 AT4G03420 414 / 2e-146 Protein of unknown function (DUF789) (.1) Potri.017G155200 [exp] 94 / 2e-20 AT1G17830 328 / 9e-112 Protein of unknown function (DUF789) (.1) Potri.018G152500 [exp] 92 / 1e-19 AT1G17830 321 / 3e-109 Protein of unknown function (DUF789) (.1) Potri.019G103000 [exp] 88 / 2e-18 AT4G03420 427 / 2e-151 Protein of unknown function (DUF789) (.1) Potri.010G000700 [exp] 86 / 2e-17 AT5G49220 342 / 3e-115 Protein of unknown function (DUF789) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017987 [exp] 344 / 2e-104 AT2G01260 77 / 1e-14 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Lus10041982 [exp] 333 / 1e-100 AT2G01260 79 / 2e-15 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Lus10033747 [exp] 251 / 2e-71 AT1G15030 80 / 5e-16 Protein of unknown function (DUF789) (.1) Lus10031598 [exp] 201 / 1e-54 AT1G15030 63 / 2e-10 Protein of unknown function (DUF789) (.1) Lus10036189 [exp] 90 / 1e-18 AT1G73210 298 / 2e-99 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10016841 [exp] 89 / 5e-18 AT4G16100 310 / 2e-102 Protein of unknown function (DUF789) (.1) Lus10038327 [exp] 86 / 1e-17 AT1G73210 319 / 1e-108 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10037716 [exp] 86 / 5e-17 AT4G16100 311 / 4e-103 Protein of unknown function (DUF789) (.1) Lus10037717 [exp] 86 / 8e-17 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10018572 [exp] 81 / 4e-16 AT4G03420 405 / 1e-142 Protein of unknown function (DUF789) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05623 [poplar] [flax] DUF789 Protein of unknown function (DUF789)
Representative CDS sequence Show only first row Show all	>Potri.004G068700.1 pacid=42794699 polypeptide=Potri.004G068700.1.p locus=Potri.004G068700 ID=Potri.004G068700.1.v4.1 annot-version=v4.1 ATGGATGGTTTGCAACTGGTTTCGATGCCACCTAGAAATGCATTCAGGGCCGATCAACCAAAGGCAAGGAGAGGGCTTCAACCTGATCCACCTTATTCCA TTAAGTCCTGCACCAGAAATTTTCTTGAAACTGGTGCATGGCATCAGTCTCAAAATAAGGTTCCCAATAAAGAGACAAGATCAAATGTATTCCCTGACTA TCCTTCATGCCAGAGTTCTGTCACTTGCCCTGATTTCTATGTTTCGACCCCAAAAGAATGTAATGCTGTTAGTTCACTTGAAGCTAATAGTTCTAATGTA GACAAGTCTGCAAATAAAAAATCTCGACAAAAAACCAGGAGGGGAAAACTGAACAAGAGAGTTTCAAGTGATACTGGATCAGCTGAACCAGAAGTTTTGT CCGAGTATGCTCATGAAAGTTCAACTTCTGAAGCCTGTAGTTATGATCATGGAGATGGACTAATATATTCTGCAACTTCACCAGAAGTTTCATTGCCAGA TGGTAGCAGTAACCAGATTGTCTTTGAAGGTGACATTAGATTCAGCAATTCTGAAGCACAGGTGATATGCACATCCAACATTGGTGAAGTGGTTGCTGTG GAAACTTTTGAAGCACTGGACATTTCATCGGCAGATGGTAGCAGTAACCAGATTGATTTTGAAGGAGATCCTAGATTTAGCAATTCTGAAACATCTACGA TCTGCTCATCCAACATTGATGAAGTTGCTACAGTGGAAGACATTATACCTTGTATAGCTCATAATTTTCCTGGGGAGTGTCAAATGATTAATTCTGAAAT CATTATACAGACAAAAGGAAAGGGCTCCAGTCAGATCAGCTGTTGTGATGATAAGCAATCCAAAGACTTCTCATATGCACCTGATTCCTCCCTAGTGTTG GACTATGTATCTATTGGTTCAAACAGTGATGATGACCCTAATGGTAGTTATCGTTCAAAACCATTTCATGAAGCTAGCAGCAGAGGTAGCGTTTTAGAAG CTCCAGGTTGCAATTCCAGAAAGGGGTCTTTATCTTATAAAAATTCATTTAATGGTGTTGTAGATACCTATCACCACACTGAGGGCTCAAAGCATGGCAG TCAGAATTTTAGCAGCAGTGACGCTCAATTACTTATATCAAGATCAAGCAAGAAAGGCAAGCAAATAAAAGCATTACCCAGGAGTGCTGGTGCTCACAAA TATGGAGGTTTTGGAAATTTGCATGTCCGGGCAGGGAAGGAAATCAACCATTCTGTCTGGAAAAAGGTTCAGAGGAATGGTGTGGATACTGAAACTAAGA TATCTCCTGTATGCTTCCAGTCAGACATGAGTTTGAAAGAAACTCCTTCACTTAAAAGGAACTGTATTGTTGCTGAGGTAAATACAGTATCAAGAACTGA GAATAAAAAACTGCTGAAAGACAAGGTTTCTAAGAAGTTGAAAAGAAAAAATAGTCTAGGTTCCAAATTAGATTACAGCTGTCATGGTAGGGGCCACAGT TCCAACAAGGCCAGCTTTAATACTCGTGCAAAGACTGGCATGCGACAGGATGAAACATTTGGTCTCACAGCTGAAGTGGATGATCAAAAAGGAGGGAAAT CTATTTCAAGAACTCATTCTATGAATACTTGTTTGATGGTTGGGTTCCAGCCCAGCAGAGTTGAATGCGCGAATTCAGAATCAGTTAACAGCTTGCAAGT TTTCCCAGATGCATTACAGCCACTTCAAAGTACTTATGATGCCGTTTCCAGCCCAAGACACCACCATTCAGAAAATCAAGGTAACTCACCAGCAAAGCTG AGCAATTTGTTGGACCAAAATGCGCTCAAGGTGCCACCTCCAGTTTACCTTCCTCATCTTTTTTTTAATAAAGGTCTCCAAATGGAAAAAGAAATTACAC TTGCTGAGCACTGTAAGCAAAACCATAGTTCTGGGTCAGTTATGCAGAAATGGATACCCATTGGGGTAAGAGAGTCTGAATTGGCCACCTCTGCTAGATT TGGTAATTCATTACCAGATCCTTCTGATAGACCAGCTCGTGAAGATTTCACTTTGAGAAATGTTCAAGAAAACGCCAGTTTTGATTCTCAAGACCTAGTT TCTTCATCGTTGTTGGGCACATGCCAAGGTTCTGGAAATGCAAGTTGTTCTCCCAAGGAAGATGACCACAGTCAAAAGTTGAATAATTCTACTGGTTGGA TGTTTGAGCTCAACAAGAAGCATGTTGAAGCTGACAGTTCAACTAGTGAATACTCTGATCAACAATTTTCAGCTTTTGAAGATAAATCAATAAAGATAAT ACAAGCAGTGAAGGATGCATGCAGGGTACAGATGGAATGTGAAGCTATTCAGATGTCCACTGGCAGTCCAGTTGCAGAGTTTGAAAGATTTCTTCATTTT TCTTCTCCTGTTATTAGCCAACTGCCAGGTTTATCATGCTGCCAAACTTGTCTGTGTGATCGGCTTGTTGGTGCGCGACCATGCAGACATGAGATACCAT ATATCCCATTGGGATGCCTCTGGAAGTGGTATGAAGAGCATGGGAATTATGGTTTAGAAGTAAGGGCAGAAGATTTTGAAAATTCTAAGAGCTTGGGTTT GGATTGTGTTTCGTTTCGTGGCTATTTTGTTCCCTTTTTATCGGCAATTCAACTATTCAAAAACCATACAAGCCAACCCATAAACAAGGCTCCTGATCAT GGGATTTTTGGTACACATGAGGCTAGTGAATCATCAGAGGATTCTAAAGCTGGTCGCCTTCCAATATTTTCTGTACTGATTCCTAAGCCTCGTACCACAG CTGCAGCTCAATCAGTTGATGTCGCATGTTCTGATGATGCAGAGCTACTCTTTGAATACTTTGAACCAGAACAACCTCAGCAAAGACAACCATTATATGA GAAGATACAAGAGCTTGTTAGAGGTAACGCATCTTCACGTTGCAAAATGTATGGGGACCCCACTAATTTGGCCTCTCTGAATCTACATGACTTGCACCCC AGATCCTGGTATTCAGTGGCATGGTATCCGATCTATAGGATACCAGATGGCAACTTTCGAACTGCATTTTTGACTTACCATTCACTTGGCCACTTGGTTC ATAGAAGTGCCAAATTTGATTCCCCAAGTAAAAATGAATGCGTAGTTTCTCCAGTTGTGGGCCTTCAGAGTTATAATGCTCAGGGTGAATGCTGGTTCCA GCCGCGGCACAGTGTAAACCAGACAACAGGAACTCCAAGCTTAGACCCTTCTGTGATCATGAAGGAGCGGCTGAGAACACTTGCAGAGACGGCATCTCTT ATGGCCAGAGCTGTAGTAAACAAGGGAAATCAGACATCCGTAAACAGACATCCTGATTATGAGTTCTTTCTTTCTAGGCGAGGCTATTCACTTCTATAG
AA sequence Show only first row Show all	>Potri.004G068700.1 pacid=42794699 polypeptide=Potri.004G068700.1.p locus=Potri.004G068700 ID=Potri.004G068700.1.v4.1 annot-version=v4.1 MDGLQLVSMPPRNAFRADQPKARRGLQPDPPYSIKSCTRNFLETGAWHQSQNKVPNKETRSNVFPDYPSCQSSVTCPDFYVSTPKECNAVSSLEANSSNV DKSANKKSRQKTRRGKLNKRVSSDTGSAEPEVLSEYAHESSTSEACSYDHGDGLIYSATSPEVSLPDGSSNQIVFEGDIRFSNSEAQVICTSNIGEVVAV ETFEALDISSADGSSNQIDFEGDPRFSNSETSTICSSNIDEVATVEDIIPCIAHNFPGECQMINSEIIIQTKGKGSSQISCCDDKQSKDFSYAPDSSLVL DYVSIGSNSDDDPNGSYRSKPFHEASSRGSVLEAPGCNSRKGSLSYKNSFNGVVDTYHHTEGSKHGSQNFSSSDAQLLISRSSKKGKQIKALPRSAGAHK YGGFGNLHVRAGKEINHSVWKKVQRNGVDTETKISPVCFQSDMSLKETPSLKRNCIVAEVNTVSRTENKKLLKDKVSKKLKRKNSLGSKLDYSCHGRGHS SNKASFNTRAKTGMRQDETFGLTAEVDDQKGGKSISRTHSMNTCLMVGFQPSRVECANSESVNSLQVFPDALQPLQSTYDAVSSPRHHHSENQGNSPAKL SNLLDQNALKVPPPVYLPHLFFNKGLQMEKEITLAEHCKQNHSSGSVMQKWIPIGVRESELATSARFGNSLPDPSDRPAREDFTLRNVQENASFDSQDLV SSSLLGTCQGSGNASCSPKEDDHSQKLNNSTGWMFELNKKHVEADSSTSEYSDQQFSAFEDKSIKIIQAVKDACRVQMECEAIQMSTGSPVAEFERFLHF SSPVISQLPGLSCCQTCLCDRLVGARPCRHEIPYIPLGCLWKWYEEHGNYGLEVRAEDFENSKSLGLDCVSFRGYFVPFLSAIQLFKNHTSQPINKAPDH GIFGTHEASESSEDSKAGRLPIFSVLIPKPRTTAAAQSVDVACSDDAELLFEYFEPEQPQQRQPLYEKIQELVRGNASSRCKMYGDPTNLASLNLHDLHP RSWYSVAWYPIYRIPDGNFRTAFLTYHSLGHLVHRSAKFDSPSKNECVVSPVVGLQSYNAQGECWFQPRHSVNQTTGTPSLDPSVIMKERLRTLAETASL MARAVVNKGNQTSVNRHPDYEFFLSRRGYSLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73210			Protein of unknown function (D...		Potri.004G068700 [exp]	0	1
AT5G62620			Galactosyltransferase family p...		Potri.012G072400 [exp]	2.23	0.9081
AT5G65685			UDP-Glycosyltransferase superf...		Potri.007G009600 [exp]	2.44	0.9009
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Potri.010G189700 [exp]	4.24	0.8947
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Potri.006G248100 [exp]	6.32	0.8662	LUG.1
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.005G117900 [exp]	7.21	0.8554
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166932 [exp]	7.48	0.8681
AT1G21650		SECA2	Preprotein translocase SecA fa...		Potri.002G078000 [exp]	9.89	0.8631
AT5G57340			unknown protein		Potri.006G165500 [exp]	10.00	0.8475
AT3G19740			P-loop containing nucleoside t...		Potri.005G093300 [exp]	11.61	0.8596
AT4G37560			Acetamidase/Formamidase family...		Potri.005G145400 [exp]	12.96	0.8484

Compare expression of checked genes

Potri.004G068700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.