Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 676 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 637 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 618 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 608 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 594 / 0 EFR EF-TU receptor (.1) AT2G24130 401 / 2e-124 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 340 / 9e-100 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G65700 333 / 6e-99 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G44700 336 / 2e-98 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G07280 332 / 3e-97 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G152500 [exp] 1248 / 0 AT3G47570 753 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 1243 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 1241 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 1007 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 1005 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 986 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 950 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228300 [exp] 949 / 0 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 946 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030587 [exp] 726 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 709 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 708 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 707 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 703 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 701 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 698 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037840 [exp] 695 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 690 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010199 [exp] 683 / 0 AT3G47570 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.004G069001.1 pacid=42795182 polypeptide=Potri.004G069001.1.p locus=Potri.004G069001 ID=Potri.004G069001.1.v4.1 annot-version=v4.1 GGAGGACTTGAGACAGACAGACACTCGCTACTAGCTTTCAAGGCTCAACTTTCAGATCCCACTAACAAACTTAGCTCATGGAATGAATCCTTACACTTCT GCCAGTGGTCAGGAGTCACGTGCGGAAAACGGCATCAAAGAGTCATAGAGCTTGACCTACGCTCCAGCCAACTAGCGGGCCGCCTATCTCCACACATTGG GAACTTGATAGGTCGTTTGGTTCGGCTAGAGAAGTTGGTCCTTGGGAACAACTCTTTCAGTGGCGGAGTCCCTGTTAATATTTCTCGTTGTTCGAATCTC ATGAACCTTAATTTCGAGGGAAACAATCTTTCTGGCAACCTTCCTCCAGGACTTGGATTGTTATCAAAGTTGCAGGTATTTATTTTTAGAAATAACAATT TAGATGGCAAGATACCACTTTCTTTTGAAAATCTTTCATCTATTGTTAAAATTGTTGGAACAAAGAATAATTTGCATGGGGGTGTTCCCAATATTATTGG GAAATTGAAAAGATTGAACTTCTTTGCCCTCGGCTCAAATCATCTGAGTGGTACAATCCCTCCCTCCCTGTATAATTTATCTTCGCTCATTCGTTTCTCT CTGCCTTATAACCAATTTCATGGTACACTTCCTCCAAACATAGGCCTAACTCTTCCAAATATTGAATTTCTTGCCGTTCACGGCAATCAACTCAGTGGAT TGATTCCACAAACGCTCTTGAATGCTTCAAAAATTACTCATATTTATCTATCGCCCAACAAATTCACCGGAAAAGTTCCTACATTAGCAAACATGCCTGA TCTAAGGGTGCTTTCAGTACAAGAAAATGATCTTGGAAACGATGAGGATGATGATTTGTCCTTTCTCTATACCCTCTCAAACAGCAGCAAGCTGGAATCT CTAGCCATAAACGACAATAATTTTGGAGGGGTGCTGCCTGATATAATTACCAACTTCTCAACAAAGCTCAAGGAGATGACTTTTAGAAGCAATCTAATAC GAGGAAGCATCCCTGACGGCATTGGATATCTCATAAGCTTGGAAGTTCTGGGTTTTGAGGCAAATCAATTGACTGGCAGTGTACCAAATTCTATTGGTAA ATTACAAAATTTAGGTGATTTGTTTCTTAATGAAAACAAATTATCAGGGAGCATACCTTCATCTTTAGGGAACATCACCTCATTGATGCAAATTGATTTC GATCAAAATAATTTACAAGGAAGCATCCCGCCAAGTCTTGGAAACTGCCGGAACTTGGTGCTCTTGGCTCTCTCCCAAAATAATCTGAGTGGTCCCATAC CGAAAGAGGTCATTAGCATTTCATCCCTGTCAACCTATCTCGTCCTCTCTGAAAATCAATTGACGGGTTCCTTGCCCTCTGAAGTTGGTAAGTTAGCGAA TCTTGGATACTTGGACATCTCCAAAAACAGGCTATCAGGGGAAATTCCCGCAAATCTTGGCAGTTGTATGAGTTTGGAACATTTTCTTAATCTCTCTTAC AACAACTTGACTGGCCAAATTCCCAAGTTTTTGGGAGACTTGATGTTGTTGAAGAGTTTGGATCTGTCATTTAATGACCTTGAAGGAGAGGTGCCTGTGC ATGGTGTCTTTCAGAATGCAAGTGCTGTTTCAGTTTCAGGGAACAAGAATCTTTGTGGAGGAATACTTGAGTTGAATCTGTCCACATGCACTTCCAAGTC AAAGCCAAAATCTTCTACCAAGCTAATATTGGGAGTCACTATTTCTTTTGGCTTTATCGGATTAATCTTGATGACCTCTTTTTTGTTTTTGTGTCGCTTG AAAGAAACAAAAAATGAGCTCACTTCAAATTTGTCATGTGAGGCGCCATTCCGAAGGGTAGCCTATGAAGACCTTCGTCAAGCAAGTAATGGATTCTCTT TTGACAATTTAATTGGTTCCGGTAGTTCTGGGTCTGTGTATAAAGGAGTTCTCGCATTGAATGGAGTTGTTGTTGCTGTGAAAGTGTTCAACTTGCGACG TAAAGGAGCTGCCAAAAGCTTTATGACAGAATGTGCAACCTTGTTAAGCATGAGGCACCGAAATCTTGTCAAAGTTTTAAGTGCCTTTGCTGGAGTCGAT TTTCAAGGTAATGATTTCAAAGCGATTGTTTATGAGTTGATGATAAATGGAAGTCTAGAAGAATGGTTGCATCCAATCCATACATCAGATCATGAAGCGC CAGAGCCAAGAACTTTGAATCTCATTAAGAGATTAAACATTGCAGTTGATGTTGCTAGTGCTCTCGACTATTTGCACAACGATTGTGAAATGCAGATTGT CCATTGTGATCTTAAGCCCAGTAACGTTCTTCTTGACGGGGATTTGACTGCTCATGTCGGGGACTTTGGATTATTGAAGTTCCTTTCCGAACCATCGAGT CAGTCATCCTTGAGTCAGAAAAGCTCCGTTGGATTAAAAGGCACCATCGGATATGCAGCCCCAGAGTACGGAATGGGGAGCAAGGTGTCAACTTATGGGG ACGTATACAGCTATGGCACCCTATTGTTGGAGATGCTTACAGGAAAAAGACCTACAGATAGCATGTTTGAGGACGGGATAGGACTTCACAATTATGTTAA AATGGCATTGCCTGACCGTGTGCTACAAGTTGCGGATCCGACACTTTTGAGAGAAGTTGATCAGGGAGCAAGTTCCGATCAAATCCTGCAGTGTTTGACT TCAATTAGTGAGGTGGGAGTTTTTTGTTCTGAAAGGTTTCCTAGAGAGAGGATGGACATTAGCAATGTTGTAGCTGAATTGAATAGAACGAAGGCCAATT TCCTCCACGGAAGGCATGGACTGCCAGCGTGA
AA sequence Show only first row Show all	>Potri.004G069001.1 pacid=42795182 polypeptide=Potri.004G069001.1.p locus=Potri.004G069001 ID=Potri.004G069001.1.v4.1 annot-version=v4.1 GGLETDRHSLLAFKAQLSDPTNKLSSWNESLHFCQWSGVTCGKRHQRVIELDLRSSQLAGRLSPHIGNLIGRLVRLEKLVLGNNSFSGGVPVNISRCSNL MNLNFEGNNLSGNLPPGLGLLSKLQVFIFRNNNLDGKIPLSFENLSSIVKIVGTKNNLHGGVPNIIGKLKRLNFFALGSNHLSGTIPPSLYNLSSLIRFS LPYNQFHGTLPPNIGLTLPNIEFLAVHGNQLSGLIPQTLLNASKITHIYLSPNKFTGKVPTLANMPDLRVLSVQENDLGNDEDDDLSFLYTLSNSSKLES LAINDNNFGGVLPDIITNFSTKLKEMTFRSNLIRGSIPDGIGYLISLEVLGFEANQLTGSVPNSIGKLQNLGDLFLNENKLSGSIPSSLGNITSLMQIDF DQNNLQGSIPPSLGNCRNLVLLALSQNNLSGPIPKEVISISSLSTYLVLSENQLTGSLPSEVGKLANLGYLDISKNRLSGEIPANLGSCMSLEHFLNLSY NNLTGQIPKFLGDLMLLKSLDLSFNDLEGEVPVHGVFQNASAVSVSGNKNLCGGILELNLSTCTSKSKPKSSTKLILGVTISFGFIGLILMTSFLFLCRL KETKNELTSNLSCEAPFRRVAYEDLRQASNGFSFDNLIGSGSSGSVYKGVLALNGVVVAVKVFNLRRKGAAKSFMTECATLLSMRHRNLVKVLSAFAGVD FQGNDFKAIVYELMINGSLEEWLHPIHTSDHEAPEPRTLNLIKRLNIAVDVASALDYLHNDCEMQIVHCDLKPSNVLLDGDLTAHVGDFGLLKFLSEPSS QSSLSQKSSVGLKGTIGYAAPEYGMGSKVSTYGDVYSYGTLLLEMLTGKRPTDSMFEDGIGLHNYVKMALPDRVLQVADPTLLREVDQGASSDQILQCLT SISEVGVFCSERFPRERMDISNVVAELNRTKANFLHGRHGLPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.004G069001 [exp]	0	1
					Potri.005G167800 [exp]	1.73	0.8453
AT5G03860		MLS	malate synthase (.1.2)		Potri.015G092000 [exp]	4.69	0.8532
AT4G27220			NB-ARC domain-containing disea...		Potri.001G406000 [exp]	5.47	0.8280
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Potri.003G191401 [exp]	5.74	0.7517
AT3G57062			unknown protein		Potri.016G038300 [exp]	6.70	0.7903
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Potri.001G206900 [exp]	7.07	0.7368
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Potri.016G046200 [exp]	7.21	0.8396	FAD2.3
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Potri.009G073800 [exp]	8.66	0.7650
AT5G01750			Protein of unknown function (D...		Potri.016G130500 [exp]	8.71	0.7812
AT5G62570			Calmodulin binding protein-lik...		Potri.015G071800 [exp]	9.16	0.7452

Compare expression of checked genes

Potri.004G069001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.