Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65730 964 / 0 YSL7 YELLOW STRIPE like 7 (.1) AT3G17650 954 / 0 YSL5, PDE321 pigment defective 321, YELLOW STRIPE like 5 (.1) AT1G48370 937 / 0 YSL8 YELLOW STRIPE like 8 (.1) AT3G27020 721 / 0 YSL6 YELLOW STRIPE like 6 (.1) AT5G53550 702 / 0 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) AT5G41000 687 / 0 YSL4 YELLOW STRIPE like 4 (.1) AT4G24120 672 / 0 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) AT5G24380 669 / 0 ATYSL2, YSL2 YELLOW STRIPE like 2 (.1) AT5G45450 304 / 2e-99 Oligopeptide transporter OPT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G151800 [exp] 1158 / 0 AT1G65730 935 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G150500 [exp] 1154 / 0 AT1G65730 936 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151600 [exp] 1143 / 0 AT3G17650 921 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.004G069300 [exp] 976 / 0 AT3G17650 897 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.005G093800 [exp] 779 / 0 AT1G65730 896 / 0.0 YELLOW STRIPE like 7 (.1) Potri.001G327300 [exp] 716 / 0 AT3G27020 1088 / 0.0 YELLOW STRIPE like 6 (.1) Potri.011G055224 [exp] 683 / 0 AT5G53550 1008 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.001G082400 [exp] 647 / 0 AT4G24120 813 / 0.0 YELLOW STRIPE like 1 (.1) Potri.001G084400 [exp] 622 / 0 AT4G24120 932 / 0.0 YELLOW STRIPE like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013323 [exp] 976 / 0 AT1G65730 1127 / 0.0 YELLOW STRIPE like 7 (.1) Lus10034177 [exp] 974 / 0 AT1G65730 1115 / 0.0 YELLOW STRIPE like 7 (.1) Lus10043408 [exp] 972 / 0 AT1G65730 1114 / 0.0 YELLOW STRIPE like 7 (.1) Lus10010205 [exp] 765 / 0 AT1G65730 873 / 0.0 YELLOW STRIPE like 7 (.1) Lus10017406 [exp] 759 / 0 AT1G65730 872 / 0.0 YELLOW STRIPE like 7 (.1) Lus10035194 [exp] 705 / 0 AT3G27020 1147 / 0.0 YELLOW STRIPE like 6 (.1) Lus10012549 [exp] 702 / 0 AT3G27020 1154 / 0.0 YELLOW STRIPE like 6 (.1) Lus10041544 [exp] 689 / 0 AT3G27020 1134 / 0.0 YELLOW STRIPE like 6 (.1) Lus10022360 [exp] 683 / 0 AT5G53550 1044 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10023240 [exp] 681 / 0 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [poplar] [flax] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Potri.004G069200.1 pacid=42795055 polypeptide=Potri.004G069200.1.p locus=Potri.004G069200 ID=Potri.004G069200.1.v4.1 annot-version=v4.1 ATGGATCACAATGGAAGAGATGATGATCGCAAAAAGGAGGACAAGAAAGAGGAAGAAAATGGGTTGTCAGTGGAAAGGGTATTTGAGAATCAAGAAGTGC CTTCATGGAGGAATCAGCTGACATTGAGGGCCTTTGTGGTCAGCTTTGTGTTGAGTATTTTGTTCAGCTTCATAGTTATGAAGCTCAATCTTACAACTGG TATCATACCTTCCCTCAATGTCTCTGCTGGTCTTTTGGGGTTCTTTTTCATCAAGACCTGGACAAAGTTTGTTGAAAGGTCTGGCCTTTTGAAGCAACCC TTTACCAGGCAAGAGAACACTGTTATCCAGACTTGTGTGGTTGCCTCCTCTGGCATTGCCTTTAGTGGAGGCTTTGGGAGCTACCTGTTTGGAATGAGTG AAGCTGTGGCCAAACAATCAACAGAACATACTGATGCCTTTAAAAATCCATCCCTTTCTTGGATGATTGGCTTTCTGTTTGTTGTCAGCTTTCTTGGACT CTTTTCAGTGGTGCCTCTCCGGAAGGTCATGATTGTTGACTTCAAATTGACATATCCAAGTGGCACTGCGACTGCTCATCTCATCAACAGCTTTCACACT CCTGCAGGAGCCAAGCTAGCAAAGAAACAAGTGAAGGTCTTGGGCAAGTTCTTCTCATTCAGCTTCTTGTGGGGTGTCTTTCAATGGTTCTATACTGCAG GAGATGGTTGTGGATTTGCTAGCTTTCCCTCACTTGGGCTTAAAGCATATGAAAACCAATTCTTCTTTGATTTCTCAGCAACATATGTTGGAGTTGGAAT GATTTGCCCATACATCATAAACGTATCAGTATTGCTTGGAGGAATTCTTTCGTGGGGTCTCATGTGGCCTCTGATAGATACAAAAAAGGGTGATTGGTAT CCAGCAGACCTCGAAGCATCCAGCCTGCATGGCCTCCAAGGTTACAAGGTATTTATTGCCATTGCCTTGATCTTGGGTGATGGTCTGTACAACTTCTTCA AGGTGCTAAGCCGAACGCTTGCTGCCTTGTTTTTTCAACTTCGAGTGAGAAATGCAACCAGTAATCTCCCTATTGCTGACCGTTCCTCTCCCGAGAGCTC CAAGATCTCCTATGATGAGCAACAACGAACCCGACTCTTTCTGAAAGATCAAATCCCAACATGGTTTTCTATTGCAGGCTATGTCGCGATTGCTGCCATC TCTACCGCCACACTTCCACATATTTTTCATGAACTCAAATGGTATTACATACTGGTCATCTACATCTTTGCCCCAACCCTGGCATTTTGTAATGCTTATG GATGTGGCCTCACTGATTGGTCCCTTGCATCAACCTATGGGAAGCTTGCTATTTTTGTAATTGGGGCATGGGCTGGTGCCTCACATGGTGGAGTTCTTGC AGGTCTAGCTGCCTGTGGAGTCATGATGAATATAGTCTCCACGGCTTCTGACCTCTCTCAAGATTTCAAGACTGGTTATCTAACCTTGTCCTCACCACGG TCTATGTTTGTGAGCCAACTGATTGGCACTGCAATGGGTTGCATAATTTCCCCTAGCGTCTTTTGGCTCTTTTTCAAGGCCTTCAAGGATCTTGGGACTA CTGGAAGTCAATACCCTGCTCCTTATGCTACTGTGTATCGAAACATGGCTATATTGGGGGTAGAAGGCTTCTCGGCTCTACCAAAGAATTGCCTCTATCT TTGTTATGGATTCTTTGGTGCAGCTATTCTGATAAATTTGATCAAGGATGCATTGGGTAAGAAATGGGCTAGGTTCATTCCCAATCCAATGGCAATGGCT ATACCTTTCTATATTGGCTCATACTTTGCCATCGACATGTGTCTGGGAAGCTTGATTCTATTTATTTGGGAAAAGATTGACAAGGTGAAGGCAGATGCTT TTGGGCCAGCAGTGGCTTCTGGTTTGATTTGTGGAGATGGGATATGGACTTTGCCTAGTTCAATACTTGCTCTAGCAGGTGTAAAACCACCCATTTGCAT GAAGTTTTTGTCAAGGGGAACAAATAGCAAGGTTGATGCATTCTTAGGGTCATAA
AA sequence Show only first row Show all	>Potri.004G069200.1 pacid=42795055 polypeptide=Potri.004G069200.1.p locus=Potri.004G069200 ID=Potri.004G069200.1.v4.1 annot-version=v4.1 MDHNGRDDDRKKEDKKEEENGLSVERVFENQEVPSWRNQLTLRAFVVSFVLSILFSFIVMKLNLTTGIIPSLNVSAGLLGFFFIKTWTKFVERSGLLKQP FTRQENTVIQTCVVASSGIAFSGGFGSYLFGMSEAVAKQSTEHTDAFKNPSLSWMIGFLFVVSFLGLFSVVPLRKVMIVDFKLTYPSGTATAHLINSFHT PAGAKLAKKQVKVLGKFFSFSFLWGVFQWFYTAGDGCGFASFPSLGLKAYENQFFFDFSATYVGVGMICPYIINVSVLLGGILSWGLMWPLIDTKKGDWY PADLEASSLHGLQGYKVFIAIALILGDGLYNFFKVLSRTLAALFFQLRVRNATSNLPIADRSSPESSKISYDEQQRTRLFLKDQIPTWFSIAGYVAIAAI STATLPHIFHELKWYYILVIYIFAPTLAFCNAYGCGLTDWSLASTYGKLAIFVIGAWAGASHGGVLAGLAACGVMMNIVSTASDLSQDFKTGYLTLSSPR SMFVSQLIGTAMGCIISPSVFWLFFKAFKDLGTTGSQYPAPYATVYRNMAILGVEGFSALPKNCLYLCYGFFGAAILINLIKDALGKKWARFIPNPMAMA IPFYIGSYFAIDMCLGSLILFIWEKIDKVKADAFGPAVASGLICGDGIWTLPSSILALAGVKPPICMKFLSRGTNSKVDAFLGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Potri.004G069200 [exp]	0	1
AT5G53620			unknown protein		Potri.012G023200 [exp]	4.24	0.7779
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.011G150200 [exp]	4.89	0.7655
AT2G37025		TRFL8	TRF-like 8 (.1.2)		Potri.006G126300 [exp]	6.24	0.7320
AT4G13780			methionine--tRNA ligase, putat...		Potri.001G317500 [exp]	9.00	0.7872
AT3G15180			ARM repeat superfamily protein...		Potri.001G396500 [exp]	10.95	0.7604
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Potri.003G095000 [exp]	11.18	0.7630	Pt-ATHSFA1.1
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Potri.003G173700 [exp]	13.41	0.7334
AT1G65540			LETM1-like protein (.1)		Potri.010G178400 [exp]	19.44	0.7738
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Potri.009G025700 [exp]	20.14	0.7085	ACA3.2
AT3G63380			ATPase E1-E2 type family prote...		Potri.013G040201 [exp]	21.16	0.7086

Compare expression of checked genes

Potri.004G069200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.