Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16520 478 / 1e-166 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3) AT4G01070 311 / 6e-101 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G01420 296 / 2e-95 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT1G01390 295 / 5e-95 UDP-Glycosyltransferase superfamily protein (.1) AT3G21790 289 / 3e-92 UDP-Glycosyltransferase superfamily protein (.1) AT3G21800 265 / 2e-83 UGT71B8 UDP-glucosyl transferase 71B8 (.1) AT1G07260 261 / 5e-82 UGT71C3 UDP-glucosyl transferase 71C3 (.1) AT4G15280 260 / 3e-81 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT3G21750 258 / 2e-80 UGT71B1 UDP-glucosyl transferase 71B1 (.1) AT3G21780 254 / 3e-79 UGT71B6 UDP-glucosyl transferase 71B6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G071000 [exp] 898 / 0 AT3G16520 485 / 2e-169 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G070000 [exp] 882 / 0 AT3G16520 474 / 4e-165 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G069600 [exp] 869 / 0 AT3G16520 498 / 2e-174 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G069800 [exp] 854 / 0 AT3G16520 496 / 7e-174 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.017G150000 [exp] 633 / 0 AT3G16520 503 / 1e-176 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.017G150100 [exp] 615 / 0 AT3G16520 451 / 9e-156 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.015G027800 [exp] 445 / 1e-153 AT3G16520 355 / 1e-118 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.015G027700 [exp] 430 / 2e-147 AT3G16520 339 / 3e-112 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.012G035800 [exp] 424 / 1e-145 AT3G16520 387 / 5e-131 UDP-glucosyl transferase 88A1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039301 [exp] 549 / 0 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10027542 [exp] 479 / 8e-167 AT3G16520 431 / 3e-148 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10039302 [exp] 452 / 6e-156 AT3G16520 393 / 2e-133 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10029452 [exp] 301 / 3e-97 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005950 [exp] 301 / 6e-97 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10026795 [exp] 281 / 2e-89 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10001906 [exp] 281 / 3e-89 AT4G01070 431 / 1e-147 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10003900 [exp] 280 / 5e-89 AT4G01070 411 / 4e-140 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10036087 [exp] 280 / 6e-89 AT3G21790 455 / 3e-157 UDP-Glycosyltransferase superfamily protein (.1) Lus10029453 [exp] 276 / 1e-87 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.004G070900.1 pacid=42794645 polypeptide=Potri.004G070900.1.p locus=Potri.004G070900 ID=Potri.004G070900.1.v4.1 annot-version=v4.1 ATGGAGGAGGCCATAGTTCTGTACCCATCACCACCTATTGGCCATTTGATATCTATGGTGGAGGTAGGGAAACTCTTATTGACCCAAAAACCTTCCCTTT CTATTCACATACTCATCACTTCTGTGCCCTATGATTCTGGCTCCACTGCCCCTTACATTGCCAACGTTGCTGCCACCATTCCCTCGATCAAATTCCACCA TCTTCCAACTGTAACCCTCCCTTCTACAAAAACCACCCATCATGAAGAACTCACTTTTGAGGTCCTTCGCCTCAGCAATCCTCACGTTCGTGAACAACTA TTGTCCATTTCAAAAAACTACACCATTCATGGACTTGTTATGGACTTCTTTTGCTGCGCTGCTCTCAATGTTGCCAAGGAACTCAATATCCCTGGCTACC ACTTCTCCCCTTCTGGTGCTGGTTTTCTCGTTGTTTTCCTTTATTTCCCAACCATTCATAACACCACCACAAAAAGTCTTAAAGATCTAAAATCCCTTCT TCATATTCCCGGTGTTCCACCAATTCCATCGTCTGACATGCCAATACCGTTACTTGATCGCGACGATAAGTCCTATGAGAACTTTTTAGATTCCTCAAGA AGCTTTCCCGAATCAGCAGGTATTGTCGTAAACACTTTTGCCTCACTTGAAGCCAGAGCTGTGAAAACATTATCAGAGGGATTCTGTGTACCCAACAACC GCGCACCGCCAATTTATTGTATCGGACCATTGATAGCCACTGAAGGTCCTAAAGATGATGCAGGCACTCGCAATGGTACTACGCTGGAGTGTCTAACATG GCTGGACTCGCAACCAGTTGGAAGTGTTGTTTTTCTATGTTTTGGTAGCTTGGGGCTGTTCTCCAAGGAACAGTTAAGAGAAATAGCTTACGGGTTGGAG AGAAGTGGTCACAGGTTCTTGTGGGTGGTTCGGAATCCACCTTCTGATAAGAAAAGCGTGGCACTCTCGGCACGTCCAAACATTGATTTAGACTCATTGC TCCCTGAAGGTTTCTTGAATCGAACCAAGGAGAGGGGACTCGTGCTGAAGTCGTGGGCTCCGCAAGTAGCAGTGCTGAACCATCCATCGGTAGGCGGGTT CGTAAGTCATTGTGGATGGAACTCGGTGCTGGAAGCAGTTTGCGCAGGTGTGCCATTGGTGGCTTGGCCACTATACGCAGAGCAGAGGCTCAATAGGATC TTCTTGGTGGAGGAAATGAAACTTGCATTGCCGATGAATGAATCTGACAACGGATTTGTGAGTTCGGCCGAGGTGGAGGAGCGAGTTCTAGGGTTGATGG AGTCGGAGGAAGGTAAGTTGATTAGGGAGAGAGCCATAGCCATGAAAATTGCAGCACAGGCCGCATTGAATGAGGGTGGTTCTTCTCGGGTGGCTTTGTC TCAACTTGTTGAGTCATGGAAAGACAAATGA
AA sequence Show only first row Show all	>Potri.004G070900.1 pacid=42794645 polypeptide=Potri.004G070900.1.p locus=Potri.004G070900 ID=Potri.004G070900.1.v4.1 annot-version=v4.1 MEEAIVLYPSPPIGHLISMVEVGKLLLTQKPSLSIHILITSVPYDSGSTAPYIANVAATIPSIKFHHLPTVTLPSTKTTHHEELTFEVLRLSNPHVREQL LSISKNYTIHGLVMDFFCCAALNVAKELNIPGYHFSPSGAGFLVVFLYFPTIHNTTTKSLKDLKSLLHIPGVPPIPSSDMPIPLLDRDDKSYENFLDSSR SFPESAGIVVNTFASLEARAVKTLSEGFCVPNNRAPPIYCIGPLIATEGPKDDAGTRNGTTLECLTWLDSQPVGSVVFLCFGSLGLFSKEQLREIAYGLE RSGHRFLWVVRNPPSDKKSVALSARPNIDLDSLLPEGFLNRTKERGLVLKSWAPQVAVLNHPSVGGFVSHCGWNSVLEAVCAGVPLVAWPLYAEQRLNRI FLVEEMKLALPMNESDNGFVSSAEVEERVLGLMESEEGKLIRERAIAMKIAAQAALNEGGSSRVALSQLVESWKDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.004G070900 [exp]	0	1
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.004G071000 [exp]	1.00	0.9895
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.004G070000 [exp]	2.44	0.9791
AT3G19230			Leucine-rich repeat (LRR) fami...		Potri.010G213101 [exp]	8.66	0.9553
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Potri.009G082700 [exp]	16.06	0.9544
					Potri.010G219950 [exp]	21.67	0.9450
					Potri.010G139766 [exp]	28.00	0.9372
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G109800 [exp]	30.82	0.9322
AT5G19760			Mitochondrial substrate carrie...		Potri.001G004366 [exp]	33.46	0.9319
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Potri.012G049101 [exp]	37.10	0.9246
					Potri.017G069550 [exp]	39.57	0.9232

Compare expression of checked genes

Potri.004G070900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.