Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11260 386 / 8e-134 RPR1, ETA3, EDM1, ATSGT1B, SGT1B ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) AT4G23570 378 / 6e-131 SGT1A phosphatase-related (.1.2.3) AT1G04190 67 / 4e-12 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G42810 66 / 1e-11 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT1G62740 58 / 4e-09 Hop2 Hop2, stress-inducible protein, putative (.1) AT4G12400 58 / 5e-09 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT1G12270 56 / 2e-08 Hop1 Hop1, stress-inducible protein, putative (.1) AT4G22670 55 / 4e-08 ATHIP1, TPR11 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) AT3G04710 53 / 1e-07 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT4G08320 53 / 2e-07 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G149800 [exp] 567 / 0 AT4G11260 419 / 1e-146 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Potri.008G156500 [exp] 67 / 3e-12 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G082900 [exp] 67 / 4e-12 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G141800 [exp] 63 / 9e-11 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.001G119500 [exp] 59 / 2e-09 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.012G046900 [exp] 58 / 6e-09 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.003G113400 [exp] 57 / 7e-09 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.002G248700 [exp] 56 / 1e-08 AT3G07370 387 / 7e-137 carboxyl terminus of HSC70-interacting protein (.1) Potri.001G392601 [exp] 52 / 3e-07 AT1G53300 260 / 1e-79 tetratricopetide-repeat thioredoxin-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027540 [exp] 477 / 1e-169 AT4G11260 412 / 2e-144 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10039297 [exp] 466 / 4e-165 AT4G11260 409 / 5e-143 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10024680 [exp] 407 / 3e-142 AT4G11260 459 / 2e-162 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10032305 [exp] 361 / 2e-124 AT4G11260 417 / 9e-147 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10021905 [exp] 66 / 6e-12 AT1G04190 515 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041189 [exp] 66 / 9e-12 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032234 [exp] 60 / 1e-09 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10024597 [exp] 60 / 2e-09 AT1G62740 886 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10004336 [exp] 59 / 4e-09 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10028919 [exp] 59 / 4e-09 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [poplar] [flax] HSP20 PF04969 [poplar] [flax] CS CS domain CL0190 [poplar] [flax] PF05002 [poplar] [flax] SGS SGS domain CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.004G071100.1 pacid=42796080 polypeptide=Potri.004G071100.1.p locus=Potri.004G071100 ID=Potri.004G071100.1.v4.1 annot-version=v4.1 ATGGCGGATCTGGAGAAGAAAGCCAAAGAAGCATTCATCGACGATCACTTCGAGTTAGCCGTCGATCTCTACACCCAAGCCATCGCTCTTAACCCTACCA ATCCTGACCTCCTCGCTGACCGTGCTCAGGCCAATATCAAACTCAACAGTCTCACCGAGGCTGTTGCCGATGCAAGCAAAGCGATTGAGTTGGATCCTTC CATGGCTAAAGCTCACTTGCGGAAAGGTATTGCATGCATGAAACTTGAGGAGTATCAGACAGCTAAGGCAGCGTTGGAAGCAGGAGCGTCTTTGGCAACA GAAGAGTCTAGATTCGCTAACTTGATCAAAGAATGTGATGAGCGCATTGCAGAGGAAACTGGTGAGACGAAAAACCAAGCAGTGGAGGCCTCAGTAAACA CTCTTTCCCTAAAAGAAGAGCCAGAAGACATTTCTTGTCAGGCTCCAATGGTAACACCTTCCAAGTCAAAGTACAGGCATGAATTCTACCAAAAGCCAGA AGAGGTGGTTGTGACTATATTTGCAAAGGGCATACCAGCCGACAGTGTTACTGTTGATTTTGGTGAACAGATTTTGAGTGTTCGCATTAATGTTCCCGGT GAAGATGCGTACTATTTTCAAACTCGCTTATTTGGGAAGATTATACTTGACAAGTGCAAATTTAACGTCTTGTCCACCAAAGTTGAAATCCGTCTCACAA AAGCTGAACCAGGTCTGCACTGGGCATCTCTTGAATACAAGAAGGAGACAGCGGTGGTAAAAAGGATTACTGTTTCCTCTGAGATTGCTCATAGGCCTAC CTATCCCTCATCAAAACCAAAAAGAGTTGATTGGGACAAGATTGAAGCTGAAGTGAAGAAGGAGGAGAAAGAGGAGAAGCTAGATGGGGATGCTGCTTTG AACAAATTTTTCCGAGAAATTTACCAAGATGCTGATGAAGACACAAGAAGAGCCATGCAAAAGTCTTTTGTGGAGTCCAACGGGACGGTGCTGTCGACAA ACTGGAAAGAAGTGGGTACTAAGACGGTGGAGGGAAGCCCTCCTGATGGCATGGAGATGAGGAAATGGGAGTACTGA
AA sequence Show only first row Show all	>Potri.004G071100.1 pacid=42796080 polypeptide=Potri.004G071100.1.p locus=Potri.004G071100 ID=Potri.004G071100.1.v4.1 annot-version=v4.1 MADLEKKAKEAFIDDHFELAVDLYTQAIALNPTNPDLLADRAQANIKLNSLTEAVADASKAIELDPSMAKAHLRKGIACMKLEEYQTAKAALEAGASLAT EESRFANLIKECDERIAEETGETKNQAVEASVNTLSLKEEPEDISCQAPMVTPSKSKYRHEFYQKPEEVVVTIFAKGIPADSVTVDFGEQILSVRINVPG EDAYYFQTRLFGKIILDKCKFNVLSTKVEIRLTKAEPGLHWASLEYKKETAVVKRITVSSEIAHRPTYPSSKPKRVDWDKIEAEVKKEEKEEKLDGDAAL NKFFREIYQDADEDTRRAMQKSFVESNGTVLSTNWKEVGTKTVEGSPPDGMEMRKWEY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Potri.004G071100 [exp]	0	1
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Potri.014G041300 [exp]	4.47	0.8123
AT2G17705			unknown protein		Potri.005G107700 [exp]	6.16	0.8488
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Potri.002G061300 [exp]	7.34	0.8334
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Potri.008G213400 [exp]	7.74	0.7819
AT5G10870		ATCM2	chorismate mutase 2 (.1)		Potri.018G019250 [exp]	8.00	0.7809
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.002G175800 [exp]	10.48	0.7432
AT4G21450			PapD-like superfamily protein ...		Potri.004G033500 [exp]	11.74	0.7496
AT1G19270		DA1	DA1 (.1)		Potri.014G039900 [exp]	12.84	0.7966
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Potri.001G310500 [exp]	14.96	0.8040
AT4G29905			unknown protein		Potri.008G007932 [exp]	15.09	0.7296

Compare expression of checked genes

Potri.004G071100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.