Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G018600 [exp] 65 / 7e-12 AT2G01570 215 / 6e-61 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.016G026066 [exp] 49 / 1e-06 AT3G42170 0 / 1 BED zinc finger ;hAT family dimerisation domain (.1) Potri.011G104000 [exp] 45 / 4e-05 AT3G42170 381 / 7e-123 BED zinc finger ;hAT family dimerisation domain (.1) Potri.001G383800 [exp] 44 / 0.0001 AT3G42170 387 / 4e-125 BED zinc finger ;hAT family dimerisation domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005558 [exp] 45 / 4e-05 AT3G42170 351 / 5e-111 BED zinc finger ;hAT family dimerisation domain (.1) Lus10030063 [exp] 44 / 0.0001 AT2G02160 126 / 3e-30 CCCH-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF02892 [poplar] [flax] zf-BED BED zinc finger
Representative CDS sequence Show only first row Show all	>Potri.004G071450.1 pacid=42795199 polypeptide=Potri.004G071450.1.p locus=Potri.004G071450 ID=Potri.004G071450.1.v4.1 annot-version=v4.1 ATGGCAGTCAGGCTAAAGTGTAAGTCTGTTGGTGAAATTGAGTATGTGGCAGAAGTTTTTCAAAACTTGAAAGATAGTGTGGAACAGAATAATTTGATCA ATGACATCATATCGAGTTTGCATTCGAAGTGCGAGAATTCAGGGACCGTGGAGTTGCAGATACAGGCGGATCCAAAGCTCAACCTGTCTGAGGAAGTTGA AGCATCACAAATTCCATCAGTGGCTTTTTCTAAGAGCTCCTTTTCAGCCTTTACAAATGTTGGTTTAAATTTAATAGAAAAGATCCAAAATAACAGGGTA GAAACAGATGAGCCTCATGAACAGGAAGTCAGGGAACAAAATGCTACAGTTGAACTTGATGTTGATGGCAACAAGCAGGTGGGAGAAACGCACGATACGC AGCAGAGCAAGAGGATTAATAAACGAAAAAAGAATGATACTCAACAGACTAAGTATACTCCTAAACCAAGAAAAACTACATCTGTAGTTTGGGAGTTTTT CAGTAAGGCTCAAAAAAATGGTGAGGTACATGCCAAATGCCAGGTTTGCAACAAAGTGCTCTGTGCTAAAAGCAGGAATGGAACTACACGCCTACACAGA CACGGTTGTTTTAAAGATTGGAAGAATGATGAAAAACAACAGTCAGTTTCTAATGTCGAGTCTAGTGCTAAGCGAACCCAAAAAACAAGGCTTCATCAAA GATTGGAGCTGGTGCTCCTCCACAAGCAAAGAGGAGAAAGCTAG
AA sequence Show only first row Show all	>Potri.004G071450.1 pacid=42795199 polypeptide=Potri.004G071450.1.p locus=Potri.004G071450 ID=Potri.004G071450.1.v4.1 annot-version=v4.1 MAVRLKCKSVGEIEYVAEVFQNLKDSVEQNNLINDIISSLHSKCENSGTVELQIQADPKLNLSEEVEASQIPSVAFSKSSFSAFTNVGLNLIEKIQNNRV ETDEPHEQEVREQNATVELDVDGNKQVGETHDTQQSKRINKRKKNDTQQTKYTPKPRKTTSVVWEFFSKAQKNGEVHAKCQVCNKVLCAKSRNGTTRLHR HGCFKDWKNDEKQQSVSNVESSAKRTQKTRLHQRLELVLLHKQRGES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.004G071450 [exp]	0	1
AT1G57790			F-box family protein (.1)		Potri.012G106800 [exp]	4.47	0.9317
AT3G18670			Ankyrin repeat family protein ...		Potri.008G022900 [exp]	4.58	0.9253
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Potri.013G024400 [exp]	7.34	0.8958
					Potri.003G104800 [exp]	9.16	0.9234
AT5G04700			Ankyrin repeat family protein ...		Potri.008G023101 [exp]	9.48	0.9183
AT5G17620			unknown protein		Potri.013G072300 [exp]	10.67	0.9181
AT1G64870			unknown protein		Potri.006G252800 [exp]	10.95	0.9061
AT5G40645			RPM1-interacting protein 4 (RI...		Potri.001G338500 [exp]	11.66	0.9100
AT5G12260			unknown protein		Potri.012G121826 [exp]	11.83	0.9133
AT1G15890			Disease resistance protein (CC...		Potri.003G062100 [exp]	11.95	0.9038

Compare expression of checked genes

Potri.004G071450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.