Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52850 803 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 402 / 9e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 392 / 2e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 384 / 6e-121 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 374 / 5e-117 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74600 369 / 4e-115 OTP87 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) AT3G63370 360 / 9e-112 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G40720 359 / 1e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 355 / 6e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 355 / 3e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 444 / 8e-143 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 439 / 8e-140 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 424 / 1e-134 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 398 / 5e-126 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 379 / 9e-120 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G156800 [exp] 380 / 1e-119 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 373 / 2e-116 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G187800 [exp] 373 / 2e-115 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G090600 [exp] 370 / 2e-115 AT2G40720 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014950 [exp] 852 / 0 AT5G52850 683 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 442 / 3e-142 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 438 / 1e-140 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 417 / 1e-131 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002054 [exp] 393 / 4e-124 AT1G74600 930 / 0.0 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10014707 [exp] 392 / 2e-123 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 392 / 5e-123 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024220 [exp] 389 / 2e-122 AT1G74600 924 / 0.0 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10007806 [exp] 385 / 5e-121 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017082 [exp] 378 / 1e-117 AT1G16480 507 / 3e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.004G071800.1 pacid=42794418 polypeptide=Potri.004G071800.1.p locus=Potri.004G071800 ID=Potri.004G071800.1.v4.1 annot-version=v4.1 ATGACAAGTAAAACAGCAACAAAGATCTTAAGCAGAACAGAACTCCCCTGTTTGCAAGAAACATGTTCTCATCTTATTTCCTTCTGCAACTCCAAATCTT TAAGGCAAGGTGTTTGCATTCACAGTCCAATAATCAAACTGGGTTTTCAAGACCACTTGTATCTAAACAACAATCTGCTGTCTCTCTATTCAAAGTGCTT TACTTTGGACTATGCACGCCAGTTCTTCGATGAAATGCCATCTAGAGATGTTGTGTCTTGGACTGGGATTCTTTCTGCTTATGTTAAGCATGAAAAACAT GAAGAAGCGCTTGGAATGTTTCAGGAAATGATGGGTTCTGGTCCTTGTCCGAATGAATTCACTTTATCAAGTGTTTTAAGGGCTTGTTCTGCTTTAGGAG AATTCAGTGATGGAAAGTGTATTCATGGATGTGTCATAAAACATGGGTTTGAGTCAAACCAGATTTTGGGGTCCGTTTTGATTGATTTGTATTCCAAGTA CGGTTCTATTGAGGAGGCATGTAGGCTATTTAGTTGTGTGGAGAATGGTGATGTTGTTTCGTGGACAACGATGATTTCTTCCCTTGTTCAAGCAGGGAAA TGGAGTCAGGCATTGAGGATTTATATTGATATGATTAAGGCTGGTGTTTATCCAAATGAATTCACTTTTGTTAAGGTTTTAGCTGCAGCGGGGTTTCTTG GTTTGAAACATGGAAAAGTGGTTCATGCCCATTTGATAGTTTTCGGGGTTGAGTTGAATTTGGTAGTGAAGACTGCCCTTGTCCATATGTATTCCAAGTG CCAGAGGATGGACGATGCTGTAAGGATTTCAAAGCTGACACCAGAGTCTGATAGGTTTTTGTGGACTGCTATTCTCTCTGGGTTGGCTCAAAACTTGAAG TTAAGGGAAGCTGTAGTTGCATTTCAGGAGATGGAGGCCTCTGGAATTTTATCGAACAATTTTACATACCTGAGTATTTTGAATGCTTGCTCGTTAATTC TGTCTCTTGATTTAGGGAGACAGATCCATGCAAGGGTGATCATGGCTGGTTTGGAGGATGATGTTCCTGTTGGAAATGCACTTGTTGACATGTACATGAA ATGCTCTCATGAGGTAAAAGATGGCTTGAGAGTGTTCAAAGGCATAGAGTCGCCTGATGTAATCTCTTGGACATCTTTGATTGCTGGCCTTTCTGAACAT GGTTTCCATCAAGGTTCTTTTGACTCGTATATGGAGATGACAGCTTCTGGGCTGCAACCAAATTCTGTTACGCTATCAATCATCCTCAGATCCTGTAGGG CAGCAAAATCTGCAAGTCAAGTATTGAAGCTGCATGGACATGTAATCAAGACGAATGCTGATCATGATATTGTTGTCAGTAATGCTCTTGTAGATGCTTA TGCTGGAAATGAAAGGGTAGATGATGCATGGCATTTGATTAGAAATATGAGCCAAAGAGATGCCCTCACATACACAGGTTTGGCCACAAGGCTCAATCAG ATGGGCCATCATGAAATGGCATTACATATAATCAATCACATGTTCAACGATGACATTAAGATGGATGGATATAGCATGGCCGGCTTCTTATCCGCATCAG CTGGCTTGAATAGCGTGGAAACTGGAATGCAACTTCATAGTTATTCTGTGAAATCTGGTTTAGGCAGCTCCATTTCAGTCTCCAATGGCCTAGTTAGCTT TTATGGGAAATGTGGACTTACACGTGATGCAGAGCGAGCATTTGCAGAAATAAGAGAGCCAGACATCGTGTCATGGAATGGATTGATATCCGTGTTGGCA TCGTATGGGCATATCTCTTCTGCTCTCTCTGCTTTTGATGATATGAGGTTAACCGGAGTCAAGCCTGATTCAGTTACCTTCTTGTTAGTGCTTTTCACTT GCACTCATTGTGGTTTGGTTGACATGGGTCTCGAGTATTTTAATTCAATGAAAGAAATGCATGGCATAGAGCCTCAGTTGGATCACTATGTTTGCTTATT TGATCTCCTTGGCCGAGCCGGCCGGCTAGAGGAGGCAATGGAAATACTAGAAACCATGCCTATTAGGCCAAATGCATCAATCTACAAGACTCTGCTGGCA GCGTGCAAAGTTCATAGGATTGTGCCTCTTGGGGAAGATATAGCCAGCCGAGGTCTCAAGCTTGATCCATCAGATCCTGCATTCAATCTGATGCTTGCAA ACTTGTATGATAGTTCTGGACGGCCTGATTTAGCTGCAACGATTCGCAGGTCGGTGAGGGATAAAGGTTCATCTCTTCCACAAAGGAGTTGGAGTTCACA TCCTGAGCTAGTGTGA
AA sequence Show only first row Show all	>Potri.004G071800.1 pacid=42794418 polypeptide=Potri.004G071800.1.p locus=Potri.004G071800 ID=Potri.004G071800.1.v4.1 annot-version=v4.1 MTSKTATKILSRTELPCLQETCSHLISFCNSKSLRQGVCIHSPIIKLGFQDHLYLNNNLLSLYSKCFTLDYARQFFDEMPSRDVVSWTGILSAYVKHEKH EEALGMFQEMMGSGPCPNEFTLSSVLRACSALGEFSDGKCIHGCVIKHGFESNQILGSVLIDLYSKYGSIEEACRLFSCVENGDVVSWTTMISSLVQAGK WSQALRIYIDMIKAGVYPNEFTFVKVLAAAGFLGLKHGKVVHAHLIVFGVELNLVVKTALVHMYSKCQRMDDAVRISKLTPESDRFLWTAILSGLAQNLK LREAVVAFQEMEASGILSNNFTYLSILNACSLILSLDLGRQIHARVIMAGLEDDVPVGNALVDMYMKCSHEVKDGLRVFKGIESPDVISWTSLIAGLSEH GFHQGSFDSYMEMTASGLQPNSVTLSIILRSCRAAKSASQVLKLHGHVIKTNADHDIVVSNALVDAYAGNERVDDAWHLIRNMSQRDALTYTGLATRLNQ MGHHEMALHIINHMFNDDIKMDGYSMAGFLSASAGLNSVETGMQLHSYSVKSGLGSSISVSNGLVSFYGKCGLTRDAERAFAEIREPDIVSWNGLISVLA SYGHISSALSAFDDMRLTGVKPDSVTFLLVLFTCTHCGLVDMGLEYFNSMKEMHGIEPQLDHYVCLFDLLGRAGRLEEAMEILETMPIRPNASIYKTLLA ACKVHRIVPLGEDIASRGLKLDPSDPAFNLMLANLYDSSGRPDLAATIRRSVRDKGSSLPQRSWSSHPELV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52850			Pentatricopeptide repeat (PPR)...		Potri.004G071800 [exp]	0	1
AT5G40410			Tetratricopeptide repeat (TPR)...		Potri.002G014800 [exp]	2.44	0.9330
AT4G02750			Tetratricopeptide repeat (TPR)...		Potri.016G019900 [exp]	3.00	0.9299
AT1G69350			Tetratricopeptide repeat (TPR)...		Potri.008G093000 [exp]	3.74	0.9321
AT2G33760			Pentatricopeptide repeat (PPR)...		Potri.004G043400 [exp]	6.92	0.9142
AT1G43760			DNAse I-like superfamily prote...		Potri.002G000402 [exp]	8.12	0.8890
AT5G19020		MEF18	mitochondrial editing factor ...		Potri.010G029900 [exp]	9.74	0.9083
AT5G04780			Pentatricopeptide repeat (PPR)...		Potri.010G241100 [exp]	12.24	0.8930
AT2G44880			Pentatricopeptide repeat (PPR-...		Potri.014G046200 [exp]	14.07	0.9081
AT2G17525			Pentatricopeptide repeat (PPR)...		Potri.005G102400 [exp]	15.00	0.8876
AT1G71210			Pentatricopeptide repeat (PPR)...		Potri.003G000601 [exp]	15.00	0.8504

Compare expression of checked genes

Potri.004G071800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.