Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52830 182 / 2e-53 WRKY ATWRKY27, WRKY27 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) AT4G01250 155 / 9e-44 WRKY ATWRKY22, WRKY22 WRKY family transcription factor (.1) AT4G23550 143 / 3e-39 WRKY ATWRKY29, WRKY29 WRKY family transcription factor (.1) AT2G34830 134 / 1e-34 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) AT1G30650 132 / 3e-34 WRKY ATWRKY14, AR411, WRKY14 WRKY DNA-binding protein 14 (.1) AT5G45050 130 / 3e-32 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT3G58710 114 / 8e-29 WRKY ATWRKY69, WRKY69 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) AT1G29280 113 / 1e-28 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT5G45260 103 / 3e-23 WRKY ATWRKY52, SLH1, RRS1 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT2G23320 98 / 1e-22 WRKY WRKY15 WRKY DNA-binding protein 15 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G149000 [exp] 298 / 1e-97 AT5G52830 192 / 2e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Potri.014G090300 [exp] 159 / 7e-45 AT4G01250 250 / 1e-81 WRKY family transcription factor (.1) Potri.002G164400 [exp] 159 / 8e-45 AT4G01250 244 / 4e-79 WRKY family transcription factor (.1) Potri.003G132700 [exp] 150 / 7e-42 AT4G01250 121 / 5e-32 WRKY family transcription factor (.1) Potri.001G099001 [exp] 148 / 4e-41 AT4G01250 138 / 2e-38 WRKY family transcription factor (.1) Potri.001G460600 [exp] 139 / 2e-36 AT1G30650 322 / 2e-106 WRKY DNA-binding protein 14 (.1) Potri.011G157100 [exp] 139 / 3e-36 AT1G30650 305 / 1e-99 WRKY DNA-binding protein 14 (.1) Potri.011G070100 [exp] 117 / 7e-30 AT1G29280 237 / 3e-78 WRKY DNA-binding protein 65 (.1) Potri.004G060900 [exp] 117 / 7e-30 AT1G29280 247 / 3e-82 WRKY DNA-binding protein 65 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039295 [exp] 189 / 3e-56 AT5G52830 170 / 4e-50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Lus10027538 [exp] 189 / 1e-55 AT5G52830 171 / 1e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Lus10007907 [exp] 154 / 8e-43 AT4G01250 228 / 2e-72 WRKY family transcription factor (.1) Lus10024676 [exp] 151 / 1e-42 AT4G01250 163 / 7e-49 WRKY family transcription factor (.1) Lus10032303 [exp] 149 / 1e-41 AT4G01250 171 / 1e-51 WRKY family transcription factor (.1) Lus10036399 [exp] 146 / 4e-41 AT4G01250 207 / 2e-66 WRKY family transcription factor (.1) Lus10038426 [exp] 139 / 1e-37 AT2G34830 252 / 1e-81 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) Lus10018815 [exp] 125 / 3e-31 AT4G01250 149 / 4e-41 WRKY family transcription factor (.1) Lus10007305 [exp] 110 / 2e-28 AT1G29280 164 / 9e-51 WRKY DNA-binding protein 65 (.1) Lus10029252 [exp] 110 / 1e-27 AT1G29280 166 / 9e-51 WRKY DNA-binding protein 65 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G072000.1 pacid=42795853 polypeptide=Potri.004G072000.1.p locus=Potri.004G072000 ID=Potri.004G072000.1.v4.1 annot-version=v4.1 ATGGCGGAGGATCAGGACTGGGATTTGTATGCAGTAGTAAGGAGTTGCACCTCTGCTGCTGCTGCTGCTGCTGCGAACAGAAACAGCAGCAGCAGCAACA TCAGTGAGAATTTTGAGTGCTTGGATTCTTTAACTTTTGATGATGATGATGATGATGGAGAATCCAACCCATTTTCTTTTCCAAATCTTGCTTCCCAGCC TAGAAACAACAACTGTTTGCAAGAATTGCAAGATTCTTACAAGCCCTTTTTGCCTAGCTTCACCACCAGTACTGGTCTTCAAGGTAAGAACAGCAACAAC AATATTCCTAGCTTCTCCATTTCTGATTTTGGGGTCATTTTTAGTGGCCAAAATCAGCCACAACTTGCACAACAACAACAACAACAACAACAACAACCAC TAACCACACCATCCACTAGTGTTGCCATCAGTCCCTGGTTCAACAATAGCCAAAAGCAGCCACAGCATGTACAGCAACAACAAAATCAAAGGAGACAATT GCACCAGCAAGGGACTAGCACTTCTTCTCTCTTTCCTTTAAGAACCACACAATCTCAGACCCCAAGAAAAAAAAAAAGTAACCAGAAGAGGCTGATATCG CATGTAACTGCAGAGAATCTCTCTAATGATGTGTGGGCTTGGAGAAAATATGGTCAAAAACCCATCAAAGGCTCTCCCTATCCAAGGAACTACTACAGAT GCAGCAGCTCAAAAGGGTGTGCAGCAAGAAAGCAAGTGGAGAGGAGCAATACAGATCCAAATATGTTTATTGTCTGCTACACAGGTGATCACACACACCC ACGTCCGACTCACAGGAACTCACTTGCCGGTAGTACAAGAAACAAGGTCCAACAACCAGCTCAAAAGCCGGAAAACAAAGAATCCGAGCATCCCATTTCA GCTGATAGGGGTTCGTGTTCTTCTCCACTTTCAGCCACTAGTTTGTCTCCAAGAACCACACTTTCAGCTCCCATTTACAATATTGAGGCGGTAGGAAACG AGCAAGAAAGCATCAAAACACATAATTTGGAAGGCGGGCATGGATTGATGGGAAGCGATGATCATGAAGATGATGTCGATGATTGTGATAATGACATTAA TGACGATTATGATGATGATCTTTTGATTCCAAATATGGCCTTAAATGAAGATCTTATTAAAGGGTTTCAGGAGCTAGTTAGCGGTAATGAAGGTGGTGGT TTAAGCAATAGTCCTGCTTTTGGAGACGACTTTTCCTCTTCTGTTGTTGGTGGCTCAGCCAGCACAGCTGCCGGAGCAACTGGTGGTGGTGGCTGCTAA
AA sequence Show only first row Show all	>Potri.004G072000.1 pacid=42795853 polypeptide=Potri.004G072000.1.p locus=Potri.004G072000 ID=Potri.004G072000.1.v4.1 annot-version=v4.1 MAEDQDWDLYAVVRSCTSAAAAAAANRNSSSSNISENFECLDSLTFDDDDDDGESNPFSFPNLASQPRNNNCLQELQDSYKPFLPSFTTSTGLQGKNSNN NIPSFSISDFGVIFSGQNQPQLAQQQQQQQQQPLTTPSTSVAISPWFNNSQKQPQHVQQQQNQRRQLHQQGTSTSSLFPLRTTQSQTPRKKKSNQKRLIS HVTAENLSNDVWAWRKYGQKPIKGSPYPRNYYRCSSSKGCAARKQVERSNTDPNMFIVCYTGDHTHPRPTHRNSLAGSTRNKVQQPAQKPENKESEHPIS ADRGSCSSPLSATSLSPRTTLSAPIYNIEAVGNEQESIKTHNLEGGHGLMGSDDHEDDVDDCDNDINDDYDDDLLIPNMALNEDLIKGFQELVSGNEGGG LSNSPAFGDDFSSSVVGGSASTAAGATGGGGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52830	WRKY	ATWRKY27, WRKY2...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.004G072000 [exp]	0	1
AT3G26618		ERF1-3	eukaryotic release factor 1-3 ...		Potri.003G159000 [exp]	3.31	0.5567	ERF1.5
AT4G22190			unknown protein		Potri.004G003900 [exp]	3.74	0.6184
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Potri.008G105500 [exp]	10.09	0.5821
AT3G11920			glutaredoxin-related (.1)		Potri.008G144800 [exp]	14.49	0.5575
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.011G058100 [exp]	15.87	0.5317
AT1G53820			RING/U-box superfamily protein...		Potri.003G073300 [exp]	23.40	0.5858
AT3G14440		SIS7, ATNCED3, ...	SALT TOLERANT 1, SUGAR INSENSI...		Potri.001G393800 [exp]	33.49	0.4870	NCED3.1
AT1G75590			SAUR-like auxin-responsive pro...		Potri.005G237000 [exp]	46.94	0.5146
AT4G35240			Protein of unknown function (D...		Potri.009G142900 [exp]	51.96	0.5165
AT4G12340			copper ion binding (.1)		Potri.003G114200 [exp]	109.89	0.4487

Compare expression of checked genes

Potri.004G072000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.