Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79940 1087 / 0 ATERDJ2A DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) AT4G21180 915 / 0 ATERDJ2B DnaJ / Sec63 Brl domains-containing protein (.1) AT1G20960 86 / 4e-17 EMB1507 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) AT2G42270 76 / 8e-14 U5 small nuclear ribonucleoprotein helicase (.1) AT3G08970 71 / 2e-12 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT1G59980 67 / 1e-11 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT1G61770 66 / 2e-11 Chaperone DnaJ-domain superfamily protein (.1) AT4G39150 63 / 3e-10 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT1G59725 62 / 4e-10 DNAJ heat shock family protein (.1) AT2G33735 58 / 4e-10 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G148800 [exp] 1175 / 0 AT1G79940 1062 / 0.0 DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) Potri.015G095500 [exp] 94 / 2e-19 AT1G20960 3326 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.012G097300 [exp] 94 / 2e-19 AT1G20960 3440 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.016G120000 [exp] 77 / 3e-14 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.004G022600 [exp] 68 / 3e-12 AT1G61770 406 / 9e-144 Chaperone DnaJ-domain superfamily protein (.1) Potri.010G036200 [exp] 66 / 4e-11 AT1G24120 566 / 0.0 ARG1-like 1 (.1) Potri.005G260400 [exp] 64 / 1e-10 AT1G21080 585 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.002G103900 [exp] 60 / 1e-10 AT2G33735 147 / 2e-46 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G094900 [exp] 64 / 2e-10 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027536 [exp] 1127 / 0 AT1G79940 1087 / 0.0 DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) Lus10039293 [exp] 1123 / 0 AT1G79940 1086 / 0.0 DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) Lus10025168 [exp] 91 / 2e-18 AT1G20960 3286 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10016048 [exp] 91 / 2e-18 AT1G20960 3558 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10003380 [exp] 77 / 3e-14 AT3G08970 615 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10002852 [exp] 76 / 3e-14 AT3G08970 600 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10042629 [exp] 72 / 1e-13 AT1G20960 402 / 3e-128 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10006760 [exp] 67 / 7e-12 AT1G61770 409 / 5e-145 Chaperone DnaJ-domain superfamily protein (.1) Lus10022297 [exp] 67 / 1e-11 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10020062 [exp] 66 / 2e-11 AT1G61770 411 / 1e-145 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF02889 [poplar] [flax] Sec63 Sec63 Brl domain
Representative CDS sequence Show only first row Show all	>Potri.004G072200.1 pacid=42793873 polypeptide=Potri.004G072200.1.p locus=Potri.004G072200 ID=Potri.004G072200.1.v4.1 annot-version=v4.1 ATGGCGGCATCGGAGGAAAACAGTGCATTGTTTCCGATATTTATCATAACAATAATGGCGATACCTTTGGTGCCATATACAGTGACGAAACTATGCCGTG CCGCGTCGAAAAAGAGTAAGATTATTCATTGTAATTGCTCTGAGTGTTTGCGGTCTGGCAAGTATCGGAAATCTATTTTCAAGAGGATTTCGAAGTTTTC GACTTGTAGTAACTTGACGTTGATATTGCTTTGGGTTGTGATGATATTTTTGGTGTCTTACATTAAGAATATGAGCCGTGAGATTCAAGTTTTCGACCCG TTTGTTATTCTGGGACTGGAGCCTGGTGCTTCGGATTCGGAAATAAAGAAGAACTATAGGAGACTTTCTATTCAGTACCATCCTGATAAAAATCCAGATC CAGAGGCCAACAAATATTTTGTGGAGTTCATAACGAAAGCTTATCAAGCTCTGACTGATCCAATATCCCGTGAGAATTATGAGAAATATGGTCATCCCGA TGGTAGACAGGGATTCAAAATGGGCATAGCTCTTCCTCAATTTTTACTTGATATTGATGGGGCATCCGGTGGAATACTTCTACTTTGGATTGTTGGGGTT TGTATACTCTTGCCATTGGTCATAGCTGTAATATATCTTTCAAGGTCGGCCAAATATACTGGAAATTATGTCATGCACCAGACTCTGTCTGCGTACTATT ACTTCATGAAGCCGTCTTTGGCCTCAAGTAAAGTAATGGAAGTCTTCATTAAGGCTGCTGAGTATATGGAATCTCCAATTCGTAGGACTGACAATGAACC ACTTCAGAAGCTGTTTATATCCGTCAGGAGTGAATTGAATCTGGACCTCAAGAACATTAAGCAAGAGCAGGCTAAGTTTTGGAAGCAGCATCCTGCGTTA GTTAAGACAGAGTTGTTAATCCAGGCTCAGTTAACTCGTGAATCAGCAGACTTGCCACCAGCTTTGTTAGGAGATTTCAGACGCGTACTAGAACTTGCAC CTCGCCTTCTTGAAGAATTGATGAAGATGGCTGTTATACCACGAACTTCCCAGGGACATGGATGGCTGAGACCTGCAACTGGGGTTGTTGAACTCTCTCA ATGTATTATTCAGGCTGTTCCTCTCAGTGCAAGGAAGGCAACAGGTGGGTCCACAGAAGGGATTGCACCCTTTTTGCAGCTGCCACATTTTACTGAGAGT GTTGTCAAGAAGATAGCACGCAAGAAAGTGAGAACATTTGAGGATTTTCATGACATGACTCTGCAAGAGCGCGCAGAGGTGCTTCAGCAAGTAGCTGGAT TTTCCTCAGCTGAAGTACAAGATGTTGAAATGGTATTGGAAATGATGCCTTCTGTAACAGTCGAGGTTAGATGTGAGACTGAAGGTGAAGAGGGCATACA AGAGGGTGACATTGTTACTGTACATGCTTGGATAACACTCAAACGTGCTAATGGCCTAGTCGGTGCACTTCCCCATGCACCCAGCTTCCCATTTCACAAG GAAGAAAATTTCTGGTTTCTGCTTGCAGATGCGGCCTCAAATGATGTTTGGTTTTCCCAAAAGGTAAATTTTATGGATGAAGCTGCAGCTATAACTGGTG CTTCCAAGACAATTGAGGATACAATGGAGGGTTCAGGAGCAAGTGTTAGAGAGACTAGTGCAGCGGTTAGAGAAGCAGTAGAGAAGGTGCGGGGTGGCTC TAGGTTAGTGATGGGCAAGCTCCCTGCCCCAGCAGAGGGCAATTACAATTTGACCTGTTACTGCTTGTGCGACTCCTGGATCGGTTGTGACAAGAAGACG AGCTTGAAGGTTAAAGTTCTGAAACGAACACGGGCTGGCACTCGGGGTGGTTTGGTATCTGAAGAAGGACCCATTGCAGAGGATGGAATTGAGGAGGAAG AGGAGAATGAAGAAGAAGAGTATGACGATGATTATGAGAGTGAGTATAGCGAAGACGAGGAAGATGAAAAGGATACAAAAAAGAAGGGCCCCGCTGCCAA TGGCAAAGTGCAGAAAAAAGGCTCAAGCTCAGAGAGTTCAGGTTCAGACGAGGAATGA
AA sequence Show only first row Show all	>Potri.004G072200.1 pacid=42793873 polypeptide=Potri.004G072200.1.p locus=Potri.004G072200 ID=Potri.004G072200.1.v4.1 annot-version=v4.1 MAASEENSALFPIFIITIMAIPLVPYTVTKLCRAASKKSKIIHCNCSECLRSGKYRKSIFKRISKFSTCSNLTLILLWVVMIFLVSYIKNMSREIQVFDP FVILGLEPGASDSEIKKNYRRLSIQYHPDKNPDPEANKYFVEFITKAYQALTDPISRENYEKYGHPDGRQGFKMGIALPQFLLDIDGASGGILLLWIVGV CILLPLVIAVIYLSRSAKYTGNYVMHQTLSAYYYFMKPSLASSKVMEVFIKAAEYMESPIRRTDNEPLQKLFISVRSELNLDLKNIKQEQAKFWKQHPAL VKTELLIQAQLTRESADLPPALLGDFRRVLELAPRLLEELMKMAVIPRTSQGHGWLRPATGVVELSQCIIQAVPLSARKATGGSTEGIAPFLQLPHFTES VVKKIARKKVRTFEDFHDMTLQERAEVLQQVAGFSSAEVQDVEMVLEMMPSVTVEVRCETEGEEGIQEGDIVTVHAWITLKRANGLVGALPHAPSFPFHK EENFWFLLADAASNDVWFSQKVNFMDEAAAITGASKTIEDTMEGSGASVRETSAAVREAVEKVRGGSRLVMGKLPAPAEGNYNLTCYCLCDSWIGCDKKT SLKVKVLKRTRAGTRGGLVSEEGPIAEDGIEEEEENEEEEYDDDYESEYSEDEEDEKDTKKKGPAANGKVQKKGSSSESSGSDEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Potri.004G072200 [exp]	0	1
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.007G100000 [exp]	1.73	0.8200
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Potri.017G148800 [exp]	6.32	0.7143
AT2G41490		GPT	UDP-glcnac-adolichol phosphate...		Potri.016G042100 [exp]	7.48	0.7201	Pt-GPT.3
AT4G24330			Protein of unknown function (D...		Potri.004G223000 [exp]	10.77	0.7748
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Potri.008G049700 [exp]	12.96	0.6943
AT3G11330		PIRL9	plant intracellular ras group-...		Potri.012G085600 [exp]	17.60	0.6767
AT1G14710			hydroxyproline-rich glycoprote...		Potri.008G138900 [exp]	23.23	0.6983
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Potri.005G074700 [exp]	25.03	0.6983	POR.1,TFCFC
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.012G111100 [exp]	28.77	0.7084	CNX1.2
AT5G19780		TUA5	tubulin alpha-5 (.1)		Potri.003G220300 [exp]	31.17	0.7125	TUA2

Compare expression of checked genes

Potri.004G072200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.