Plant FIBer expression Database

Potri.004G072400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G24060 377 / 2e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
AT3G49140 245 / 3e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1)
AT3G59300 139 / 5e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G148600
[exp]
741 / 0 AT3G49140 256 / 1e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Potri.014G151700
[exp]
123 / 3e-30 AT3G59300 523 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Potri.002G230700
[exp]
117 / 2e-28 AT3G59300 542 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027532
[exp]
484 / 6e-168 AT5G24060 402 / 4e-136 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
Lus10039291
[exp]
473 / 9e-164 AT5G24060 400 / 1e-135 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
Lus10014952
[exp]
352 / 3e-117 AT5G24060 324 / 2e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
Lus10038836
[exp]
236 / 1e-72 AT3G49140 275 / 5e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.004G072400.1 pacid=42796033 polypeptide=Potri.004G072400.1.p locus=Potri.004G072400 ID=Potri.004G072400.1.v4.1 annot-version=v4.1
ATGATGATGGCCATGGCAATGATGATTGAAACCACCACAGCCGTCCGATTCCCCCCCTCTACCACTCCTGCTGCAAATTTCTGCTCCTCCTTGCCACGCA
GCAGCTCTGCCATTTCTTGGAATAAATTTCAAGGATTAAATGGTGGTTCTTTCTTTAGAAGGAGCAGTCGTTTAAAGAGTAAGACTCAAGCGTCTGCAGA
GAATTTAGATTCGAACTTGGAATCTTCAGAGCAGAATGGTAAAATGCGATACCATCCATTTGAGGATATTGCAGTGTCAGCATCAGAAACAAGCAGTGAT
GCTATGCTTACACCTCAAGAAACATCTAGGACTATCGTTGAGGCGAAAAGCAAAGCAACACTAATGTTGACTGGTGTGATAAATGATGATTTTCATGAGA
ACATTATCTGGCCAGACTTGCCTTATGTGACTGACGAACATGGGAATATATACTTTCAAGTGAAGAATGATGAGGACATTTTGCAAGCACTAACTACAGA
AAATAATTTTGTGCAAGCCATTATAGGTTTTGATGCCATGGAGATGCTCAGTGAGATGGAGTCATTGGGTACATCTGAAATTGATTTTGGGGTTGATGAA
ATTGAAGATGAAGATAGTGATGTCGAAGATGGGGGCGATGAGGATGAGGATGATGATGACTATGATGAGGACTTGGTGGCTGTTCTTGATGATTCGGACG
AGGAAGATGATTCTGACGAGGAACTTGGAGACTGGGCAAAATTAGAGACGATGCGTTCTTCTCATCCAATGTATTTTGCCAAAAAGCTGGCTCAGGTTGC
TTCAGATGATCCTATAGACTGGATGGAGCAGCCTCCTGCTGGTCTAGCTATCCAGGGCCTTATTAGACCTGCCTTCATGGAAGAACACTCTGACATCCAG
AGGCATATGTCTGGCAATCAGTCTTGTGATGCTGATATAAATAAGGTTGGGAAAAGTGTAGAAGGCAAACTAGAAGAATCTGGTGTGGTAAATGGTCATG
AACACAAGTCAGGATCATCTGAAGATAGTTCAATGTGGGCAGAGGAATCGGAGAAGGATGAGGCCCCAAGAAGTGGAACTTCATTTTACAAGCTGGAGAT
GATTAAAATTCAGCTGATTTCAGCTCATGGACACCAGACTATGGTCGAAGTAGAAGACTTTATGAAAGCAAAACCTGATGCAATTGCACTTTCGGCAGCC
AGAATCATATCTCTAATGAAAGCTGGTGGAGAAAGGATTACACAGGCCTTTAAATCTCTGTGCTGGAGATGCAAGGGTATTCAAGTGGAGGAGGCGGCAA
TTATTGACGTAGATTCCCTTGGATTTGATTTGAGAGTTTGTTCTGGAACACAAATCCAAACGCTGCGGTTTGCATTCAATTCACAGGCAACTACAGAATA
TAGTGCTGAAAGACAGCTGAATGACTTACTATTCCCAAGGATCCAAAGCAGGCTGCCGAAAAAGAAACCGACTCATCAGAACGATCACTAA
AA sequence
>Potri.004G072400.1 pacid=42796033 polypeptide=Potri.004G072400.1.p locus=Potri.004G072400 ID=Potri.004G072400.1.v4.1 annot-version=v4.1
MMMAMAMMIETTTAVRFPPSTTPAANFCSSLPRSSSAISWNKFQGLNGGSFFRRSSRLKSKTQASAENLDSNLESSEQNGKMRYHPFEDIAVSASETSSD
AMLTPQETSRTIVEAKSKATLMLTGVINDDFHENIIWPDLPYVTDEHGNIYFQVKNDEDILQALTTENNFVQAIIGFDAMEMLSEMESLGTSEIDFGVDE
IEDEDSDVEDGGDEDEDDDDYDEDLVAVLDDSDEEDDSDEELGDWAKLETMRSSHPMYFAKKLAQVASDDPIDWMEQPPAGLAIQGLIRPAFMEEHSDIQ
RHMSGNQSCDADINKVGKSVEGKLEESGVVNGHEHKSGSSEDSSMWAEESEKDEAPRSGTSFYKLEMIKIQLISAHGHQTMVEVEDFMKAKPDAIALSAA
RIISLMKAGGERITQAFKSLCWRCKGIQVEEAAIIDVDSLGFDLRVCSGTQIQTLRFAFNSQATTEYSAERQLNDLLFPRIQSRLPKKKPTHQNDH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G24060 Pentatricopeptide repeat (PPR)... Potri.004G072400
[exp]
0 1
AT3G49140 Pentatricopeptide repeat (PPR)... Potri.017G148600
[exp]
1.73 0.8828
AT1G01790 ATKEA1, KEA1 K+ efflux antiporter 1, K+ EFF... Potri.002G157200
[exp]
2.00 0.8759
Potri.008G195300
[exp]
4.00 0.8350
AT1G71710 DNAse I-like superfamily prote... Potri.002G063500
[exp]
5.74 0.8715 Pt-IP5.2
Potri.005G201350
[exp]
6.48 0.8367
AT5G39940 FAD/NAD(P)-binding oxidoreduct... Potri.004G130000
[exp]
7.00 0.7973
AT2G26350 PEX10, ATPEX10 peroxin 10 (.1) Potri.006G222000
[exp]
9.94 0.8405
AT5G48960 HAD-superfamily hydrolase, sub... Potri.008G205900
[exp]
11.40 0.8368
AT5G03570 FPN2, ATIREG2 FERROPORTIN 2, ARABIDOPSIS THA... Potri.016G128500
[exp]
12.24 0.7973
AT2G04270 RNEE/G RNAse E/G-like (.1.2.3.4.5) Potri.014G170300
[exp]
12.96 0.8691

Potri.004G072400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.