Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52810 390 / 2e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027529 [exp] 371 / 1e-128 AT5G52810 364 / 4e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039290 [exp] 328 / 1e-111 AT5G52810 293 / 4e-98 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10043176 [exp] 144 / 8e-41 AT5G52810 153 / 1e-44 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01488 [poplar] [flax] Shikimate_DH Shikimate / quinate 5-dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.004G072500.1 pacid=42795750 polypeptide=Potri.004G072500.1.p locus=Potri.004G072500 ID=Potri.004G072500.1.v4.1 annot-version=v4.1 ATGGCGTCAACACCAAACACAGCCAATAACACCGCCACCGCCATTATAACATCACCTTTATTCCTCACCAATGAATCTCTACACTCAATCCTCGCACACA ATTCCTTAATTCAACACTTCCATACATCTCTCCCCACTACCTCTTCCACACTCCACACTCCAATCCGTCAAAGCTATGACCTTTCACAATCATCCTCTCT CCTTTTGATGCCCTCTTGGTCGTCTACTCCCTCCCTTCCTTATATAGGTGTCAAGCTTGTCACCTACTTCCCTCAAAACTCCGCACTAAACTTGCCTGGA ATTCATGCAAGCTATGTGCTTTTTAGCTCTACAACTGGCCAGACTTTGGCTTCAATGGATGGCACTGTTTTGACCCTTTATAGAACTTCTTGTGTATCTG GGCTAGCATCAAAAATATTGGCTAGGAATGATAGTAAAGTTCTTGTGATGGTTGGTGCTGGTGCTTTGGCACCCCATTTGATAAAGGCTCATCTTGCTGC AAGACCCAGTTTGCAAAAGGTGATAATTTGGAATAGAACAGTAAAGAAAGCTTCAGACTTGGCTGAGAAATTGAAGAAAGAATGCATTGGAAATGATGGG GTTTGTTTTGAAAGTAATGGGAATTTGGAGGAAATTATTGGATTGGGTGATATTGTGAGTTGTGCTACAAATGCTGATGCACCTTTGGTCAAGGGTGAGA AACTGAAGCAAGGAGCCCATTTGGATATGGTGGGTTCTTTCAAGGAGACAATGAGGGAATGTGATGATGAGGCAATAAGGAGAGGAAGAGTGTTTGTTGA TAACGAGGCTGCTTTGGTGGAGGCAGGGGAACTTGTAGGTGCTTTTGAGAGGGGGGTGACTAAGAAAGAGGATGTGGGATTTTTGGTGGAGTTGATCAAA GGGGAGCAAGTTGGCAGAAAGAATTCTGAAGAGATCACCGTGTTCAAGTCTGTTGGTTCTGCAGTTGTGGATTTGCTTGCTGCACAATTGGTGTATGAGA GTTGCATCAAGGATAAGTAA
AA sequence Show only first row Show all	>Potri.004G072500.1 pacid=42795750 polypeptide=Potri.004G072500.1.p locus=Potri.004G072500 ID=Potri.004G072500.1.v4.1 annot-version=v4.1 MASTPNTANNTATAIITSPLFLTNESLHSILAHNSLIQHFHTSLPTTSSTLHTPIRQSYDLSQSSSLLLMPSWSSTPSLPYIGVKLVTYFPQNSALNLPG IHASYVLFSSTTGQTLASMDGTVLTLYRTSCVSGLASKILARNDSKVLVMVGAGALAPHLIKAHLAARPSLQKVIIWNRTVKKASDLAEKLKKECIGNDG VCFESNGNLEEIIGLGDIVSCATNADAPLVKGEKLKQGAHLDMVGSFKETMRECDDEAIRRGRVFVDNEAALVEAGELVGAFERGVTKKEDVGFLVELIK GEQVGRKNSEEITVFKSVGSAVVDLLAAQLVYESCIKDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52810			NAD(P)-binding Rossmann-fold s...		Potri.004G072500 [exp]	0	1
AT3G06200			P-loop containing nucleoside t...		Potri.008G200600 [exp]	2.23	0.9494
AT1G15710			prephenate dehydrogenase famil...		Potri.001G201100 [exp]	4.47	0.9368
AT3G06200			P-loop containing nucleoside t...		Potri.010G029400 [exp]	8.12	0.9368
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Potri.003G089700 [exp]	9.05	0.9433
					Potri.004G038500 [exp]	12.72	0.9319
AT2G37000	TCP	TCP11	TCP family transcription facto...		Potri.016G094800 [exp]	15.39	0.8984
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.015G013800 [exp]	17.66	0.9048
AT5G01590			unknown protein		Potri.016G123900 [exp]	21.21	0.9360
AT3G53580			diaminopimelate epimerase fami...		Potri.006G102700 [exp]	21.54	0.9038
AT1G65030			Transducin/WD40 repeat-like su...		Potri.012G107400 [exp]	22.00	0.9091

Compare expression of checked genes

Potri.004G072500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.