Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37930 174 / 7e-51 Protein with RING/U-box and TRAF-like domains (.1) AT5G37890 166 / 8e-49 Protein with RING/U-box and TRAF-like domains (.1) AT1G66620 162 / 7e-47 Protein with RING/U-box and TRAF-like domains (.1) AT5G37870 161 / 9e-47 Protein with RING/U-box and TRAF-like domains (.1) AT5G37910 150 / 9e-43 Protein with RING/U-box and TRAF-like domains (.1) AT5G62800 143 / 2e-39 Protein with RING/U-box and TRAF-like domains (.1) AT1G66650 134 / 4e-36 Protein with RING/U-box and TRAF-like domains (.1) AT1G66630 131 / 3e-35 Protein with RING/U-box and TRAF-like domains (.1) AT1G66660 129 / 3e-34 Protein with RING/U-box and TRAF-like domains (.1.2) AT5G37900 94 / 4e-22 TRAF-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G148100 [exp] 441 / 1e-154 AT5G37930 206 / 4e-63 Protein with RING/U-box and TRAF-like domains (.1) Potri.017G122800 [exp] 261 / 6e-84 AT5G37930 180 / 5e-53 Protein with RING/U-box and TRAF-like domains (.1) Potri.004G091900 [exp] 234 / 7e-76 AT5G37930 143 / 3e-41 Protein with RING/U-box and TRAF-like domains (.1) Potri.004G091800 [exp] 120 / 9e-30 AT5G37930 81 / 4e-16 Protein with RING/U-box and TRAF-like domains (.1) Potri.012G015500 [exp] 100 / 2e-23 AT4G27880 542 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.015G013000 [exp] 98 / 1e-22 AT4G27880 546 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.002G171500 [exp] 95 / 1e-21 AT3G61790 558 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.014G099200 [exp] 92 / 1e-20 AT3G61790 551 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.003G198600 [exp] 88 / 2e-19 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028535 [exp] 225 / 2e-72 AT5G37930 134 / 7e-38 Protein with RING/U-box and TRAF-like domains (.1) Lus10009111 [exp] 224 / 6e-72 AT5G37930 134 / 5e-38 Protein with RING/U-box and TRAF-like domains (.1) Lus10022405 [exp] 102 / 3e-24 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10018110 [exp] 102 / 3e-24 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10013739 [exp] 97 / 2e-22 AT3G58040 493 / 6e-178 seven in absentia of Arabidopsis 2 (.1) Lus10039202 [exp] 95 / 8e-22 AT3G58040 488 / 1e-175 seven in absentia of Arabidopsis 2 (.1) Lus10030248 [exp] 90 / 9e-20 AT3G61790 514 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10004001 [exp] 89 / 1e-19 AT3G61790 525 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10016348 [exp] 89 / 3e-19 AT3G61790 459 / 7e-163 Protein with RING/U-box and TRAF-like domains (.1) Lus10002761 [exp] 88 / 4e-19 AT3G61790 462 / 1e-164 Protein with RING/U-box and TRAF-like domains (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [poplar] [flax] TRAF PF03145 [poplar] [flax] Sina Seven in absentia protein family
Representative CDS sequence Show only first row Show all	>Potri.004G072800.2 pacid=42794789 polypeptide=Potri.004G072800.2.p locus=Potri.004G072800 ID=Potri.004G072800.2.v4.1 annot-version=v4.1 ATGAGAAAATTCATACTTGAAGATGGAGAAGGTTCAAGCTATCCAAGGCCGAAAAGACAAAGACCCTCTTCTCCCTCCTCTCCTCCTCCTCCTCCTCCTG AATTTCCTATGGAAGAAATTGCTCGTGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGAAGACACAAGTGA TGAAAGTGAAGAAGAAGATGAGGAGGAGGTGGAAGAAATAGTGAGACCACCACCACGACCACCACAACAACAAAATAATCAGATGGAAACTGTGGGACTA CAACTACTACAACCCAGATTATATGAGAGTCCAATCTTTCTAGAACCTACCCTTGTGAGGCCCAGCAGAAATGGAGCTATTTTTGTAGCTTTATCAGACC CAGAAGTTCTTGATTGTCCCACCTGCTGTGAAACCTTGACCATTCCTGTTTTTCAGTGTGAGAATGGACATGTAGCTTGTTCTTCATGCAGCAAAAAACT CCAACATAAGTGTCCTTCTTGTGCTATGCCCATTGGTGATAACCGTTGTCGTGCCATTGAGAAGGTTCTTGAATCGCTGAAAGTACGATGCTCCAATTGG AGGTATGGATGCAGAGAAAACATTTGTTTCAGTAAGAAATACGAACATGACAAGTGTTGTAGCCATGCGCTGTGCACATGCCCCCTGTTGGGTTGCAACT TCCAGGGCTCATCTAAGCAATTGTACCTACACTGTAGACGTAAACATTTAGGCAAGTTGACAAGTTTCCAATTCAATACCAGCTTCCCTCTTTTCATTAC TGTCAATGACAAATTCTGTATTCTTCAAGAAGATAAAGAAGGTGTTTTATTCATTCTGAATAATAGATCGGATACTCTTGGACATGTGATCACTGTTAGT TGTATGGGGCTTTCTTCATCAAAGCCAGGGTACTTTTACGAACTTATGACAAGAGCAGAGGGAAGCAATATCAGATTCCAATCTTCCACAAGAAATGTCC GAACCAGAGTTGATGACCCTCCATCGCTGGGGTGCCTTCTAGTACCAAATGATTTCCTTGGTACTTATGGGCAGATAACCTTGGACGTCTGCATCTGGCG TCTTGGCTCATATCCTGCCATTAGCTCTGTAAGAGCATGA
AA sequence Show only first row Show all	>Potri.004G072800.2 pacid=42794789 polypeptide=Potri.004G072800.2.p locus=Potri.004G072800 ID=Potri.004G072800.2.v4.1 annot-version=v4.1 MRKFILEDGEGSSYPRPKRQRPSSPSSPPPPPPEFPMEEIAREEEEEEEEEEEEEEEEDDDDEDTSDESEEEDEEEVEEIVRPPPRPPQQQNNQMETVGL QLLQPRLYESPIFLEPTLVRPSRNGAIFVALSDPEVLDCPTCCETLTIPVFQCENGHVACSSCSKKLQHKCPSCAMPIGDNRCRAIEKVLESLKVRCSNW RYGCRENICFSKKYEHDKCCSHALCTCPLLGCNFQGSSKQLYLHCRRKHLGKLTSFQFNTSFPLFITVNDKFCILQEDKEGVLFILNNRSDTLGHVITVS CMGLSSSKPGYFYELMTRAEGSNIRFQSSTRNVRTRVDDPPSLGCLLVPNDFLGTYGQITLDVCIWRLGSYPAISSVRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37930			Protein with RING/U-box and TR...		Potri.004G072800 [exp]	0	1
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.018G067500 [exp]	3.00	0.9539
AT4G10270			Wound-responsive family protei...		Potri.019G116700 [exp]	3.60	0.9401
AT4G18975			Pentatricopeptide repeat (PPR)...		Potri.011G076800 [exp]	4.12	0.9384
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Potri.010G153900 [exp]	4.89	0.9555
					Potri.001G035450 [exp]	5.29	0.9398
AT3G04310			unknown protein		Potri.019G023400 [exp]	6.92	0.9390
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Potri.008G098700 [exp]	7.34	0.9462
AT1G36320			unknown protein		Potri.002G091000 [exp]	8.71	0.9552
AT5G12040			Nitrilase/cyanide hydratase an...		Potri.006G222900 [exp]	11.48	0.9274
AT2G44760			Domain of unknown function (DU...		Potri.002G138600 [exp]	12.32	0.9536

Compare expression of checked genes

Potri.004G072800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.