Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52780 101 / 3e-27 Protein of unknown function (DUF3464) (.1) AT4G19100 61 / 1e-11 PAM68 photosynthesis affected mutant 68, Protein of unknown function (DUF3464) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G132001 [exp] 68 / 4e-14 AT4G19100 153 / 2e-46 photosynthesis affected mutant 68, Protein of unknown function (DUF3464) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038849 [exp] 103 / 2e-27 AT5G52780 131 / 2e-38 Protein of unknown function (DUF3464) (.1) Lus10012152 [exp] 63 / 4e-12 AT4G19100 190 / 4e-61 photosynthesis affected mutant 68, Protein of unknown function (DUF3464) (.1) Lus10007593 [exp] 58 / 6e-10 AT1G31830 743 / 0.0 Amino acid permease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11947 [poplar] [flax] DUF3464 Photosynthesis affected mutant 68
Representative CDS sequence Show only first row Show all	>Potri.004G072900.1 pacid=42795052 polypeptide=Potri.004G072900.1.p locus=Potri.004G072900 ID=Potri.004G072900.1.v4.1 annot-version=v4.1 ATGAATACTCTAGTTTGTTCACAAAAATCACCCCTCTATCTTGCAAACTCTTCACCATGGAAGCCAATGGCTCCTTCTATCCTCCCAACAAGCATACAAA AAACCCTAAACAACCCACCTGCAACATGGAAAGTGCAAGCAAGTGCTAAAGGCTTTGGTAGCGCCCCACCTTCCATACAAGAAAGTAGCATTAAGAAAAC CTCCAAAAACACCAACAACAATGACGACGAAGAAATCCCAGAAGAGGTGCTTTATAGAATCATAAAGAGAGTCTTGGTATCCGTTGGGGCACCTATGGCA CTTGCCTTTGCATCAATGAACGTGATAGGTTTGGTCATGGAGCAGCATATATGGAATGTGCCAAAATGGTTCATGTTTTTGACACTTTTTCTTACTTTAG GAGCTTCTGTTTGTGGGATTGCTTATGGGGCTTTATCTACTAGCATGGATCCAAACGAAAAGGGATCGTTTCTTGGGTTTGAACAAGTCCAGAAGAATTG GGTTGAGATGTGGAAAGAAGAAGATGAGGGCAAGAAATCTTGGGACTGA
AA sequence Show only first row Show all	>Potri.004G072900.1 pacid=42795052 polypeptide=Potri.004G072900.1.p locus=Potri.004G072900 ID=Potri.004G072900.1.v4.1 annot-version=v4.1 MNTLVCSQKSPLYLANSSPWKPMAPSILPTSIQKTLNNPPATWKVQASAKGFGSAPPSIQESSIKKTSKNTNNNDDEEIPEEVLYRIIKRVLVSVGAPMA LAFASMNVIGLVMEQHIWNVPKWFMFLTLFLTLGASVCGIAYGALSTSMDPNEKGSFLGFEQVQKNWVEMWKEEDEGKKSWD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52780			Protein of unknown function (D...		Potri.004G072900 [exp]	0	1
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Potri.002G005500 [exp]	1.73	0.9741	PtrPHT1-9
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.008G022200 [exp]	2.44	0.9699
AT1G13940			Plant protein of unknown funct...		Potri.006G262600 [exp]	2.44	0.9695
					Potri.012G120584 [exp]	4.24	0.9540
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.008G022280 [exp]	4.47	0.9669
AT1G53230	TCP	TCP3	TEOSINTE BRANCHED 1, cycloidea...		Potri.001G375800 [exp]	5.00	0.9609
AT5G23250			Succinyl-CoA ligase, alpha sub...		Potri.016G071850 [exp]	5.74	0.9533
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Potri.019G014200 [exp]	6.00	0.9471
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Potri.004G020500 [exp]	8.83	0.9519
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Potri.010G027800 [exp]	10.90	0.9569

Compare expression of checked genes

Potri.004G072900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.