Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01290 60 / 5e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G163000 [exp] 81 / 1e-15 AT4G01290 499 / 1e-159 unknown protein Potri.014G089200 [exp] 77 / 3e-14 AT4G01290 501 / 1e-160 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039283 [exp] 81 / 1e-15 AT4G01290 50 / 5e-06 unknown protein Lus10027520 [exp] 78 / 9e-15 ND 40 / 0.004 Lus10036389 [exp] 74 / 3e-13 AT4G01290 483 / 4e-154 unknown protein Lus10007916 [exp] 72 / 1e-12 AT4G01290 507 / 3e-163 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G073400.2 pacid=42796660 polypeptide=Potri.004G073400.2.p locus=Potri.004G073400 ID=Potri.004G073400.2.v4.1 annot-version=v4.1 ATGAGTACAGAGATTGAAGACGTTGCAAAATCAACATCAGATGATGATACAATTCAAGAGTTCCACAAAGAGACAAGATATGCATATAAGAAAGGGTTTC TTTTATCATTAGCTGAAATGGATGAATGCAAGAGGTTACCAAGGGGGTTTGATTCATCAACTTTATGTGAACTCAATGCTGCAGCAACTACTAGATCAAC ATATCTGCTTTATGATTCGGGCCGAAGGGATGGCATCCAATCTCCTGATTCATGGCTGAATCCTGCTAATGGACTGCCACAACAGAATCCTGCTAATGAT CATTCACAGCAGTGTCCTGCTAATGATCATTCACAGCAGTATCCTGCTTATGGACATCCACAGCAGAATCCTGCAAATGGACTTCTGGGAAACAGGTATC TTCTTAGAGCACCTGTATGTGTAGCTGGGTCATCTGCTCAAAATGTTCGAAGTTGTAATCTGCTCAACAAAAGTATTGCACCATATCGGCCTCCACACCT TTATAAGATGAACCTTCTTTCTGGGAGAGAGAATAAAGATGAAAAAAATGGGGAAACATTTGGATTTACGGAGTGTCCAAGACTTGAGAGTGCAGAAGGT GAAAGGAGGGGAAGAGAGTCACCTGAATGGACAAGGAAGGAACATAAAAATGGTGTTCAAGAGAACCGAAAGAATATTTCAGATGAGCACAAAGAAAACT TGGACCCAGATGTTGCCACTCTCCTGGATGATTTCAGAACCGAGAAGAGGCTTTTCAACAAGTGCACTCAATCAGAGGAATGTGCGCTATCATCAACACC AAGTGATGCAAGCCCTTGTTCTTCCACACCAAGAACTATAATCAGCAAACTATTACCCCATGAGATGATGAGCAAGTGCAACGAATCAGAGGAATGCTTG GTGTCGTCAAATAAATATGATGCAAGGCCCTATTATTCAATGCAAAGTTCTATTCTCAGCAAACTATTACCCCATGAGCTGATGAGCAAGTCTCCTGAGC AAAGTCTTGAAACAAAATCCAACAAAAAGGCTAAACAACACGAGGTCACAAGTCTTCAGTTAGTCTCTGATGAAATTTGTTTGCCTGATGAGGACAGTTT GATTACTTCTGATGACTTCAAACTACCAATGGACTTGGTGTTATTACCTGAAAGTAACGTGACTGAAACCGATTTGTTTGCTTCTAGTTCAAGAATGCCG GGAAATGTTTCTCAGATGCTAGCTGCTTTAAATGTCCCATTGGATGAAAGATCTCAATCCAGCTTGGAAGTCCCCCCTACCTGTTCTGGTTCTGACAATA TAAATGGCTTAGATACTTCTCATGGAAATCTGCGTGCCAGGCAAGAATTCCCACAATCCCATCATTCTCAGACAAACCGAAGCAGCGCTTTGTTCTGTCC TTCAGACTCTCAAAGAGCTCGTAGGAATAAATTCAAGCCCCATTTGAAGAACCTTTCTTATAACCATCCTCCTATCAGCTATATTCCTTTATACGTGCTT CCCCTAGACCCATATGATGCATCAACCAGCTTTGACATTCCTACTATGCAACCTTTGCCCCAGCAGATCCTAGTTCCTGCTGAATTTCCTCACCAAGTAA ATGGATTGCCAAGGGGACCATCTTATCCCCCCATCAACGGAATGGCTTCTTATTCTCCTCTGAACTATTGTCATCAAACTTATAGGGGCTCTACAACGAC AAGTCCAGGTTCTCATGTAGTTGCAAACAGTGATCAAGCTGCCATCAACAACAGGCTTCCAGATATGGAACATATAACCAACCAGATGCATCCTGGTTGG CCATGGACAGGGAGTGTTCAACAATTCAGCCGATAA
AA sequence Show only first row Show all	>Potri.004G073400.2 pacid=42796660 polypeptide=Potri.004G073400.2.p locus=Potri.004G073400 ID=Potri.004G073400.2.v4.1 annot-version=v4.1 MSTEIEDVAKSTSDDDTIQEFHKETRYAYKKGFLLSLAEMDECKRLPRGFDSSTLCELNAAATTRSTYLLYDSGRRDGIQSPDSWLNPANGLPQQNPAND HSQQCPANDHSQQYPAYGHPQQNPANGLLGNRYLLRAPVCVAGSSAQNVRSCNLLNKSIAPYRPPHLYKMNLLSGRENKDEKNGETFGFTECPRLESAEG ERRGRESPEWTRKEHKNGVQENRKNISDEHKENLDPDVATLLDDFRTEKRLFNKCTQSEECALSSTPSDASPCSSTPRTIISKLLPHEMMSKCNESEECL VSSNKYDARPYYSMQSSILSKLLPHELMSKSPEQSLETKSNKKAKQHEVTSLQLVSDEICLPDEDSLITSDDFKLPMDLVLLPESNVTETDLFASSSRMP GNVSQMLAALNVPLDERSQSSLEVPPTCSGSDNINGLDTSHGNLRARQEFPQSHHSQTNRSSALFCPSDSQRARRNKFKPHLKNLSYNHPPISYIPLYVL PLDPYDASTSFDIPTMQPLPQQILVPAEFPHQVNGLPRGPSYPPINGMASYSPLNYCHQTYRGSTTTSPGSHVVANSDQAAINNRLPDMEHITNQMHPGW PWTGSVQQFSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01290			unknown protein		Potri.004G073400 [exp]	0	1
AT1G77780			Glycosyl hydrolase superfamily...		Potri.010G088500 [exp]	1.00	0.9977
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Potri.019G081300 [exp]	7.93	0.9785
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Potri.008G168900 [exp]	10.19	0.9944	Pt-RIC1.1
					Potri.009G036600 [exp]	12.24	0.9943
AT5G66110		HIPP27	heavy metal associated isopren...		Potri.005G110400 [exp]	13.56	0.9920
AT1G30870			Peroxidase superfamily protein...		Potri.010G175100 [exp]	13.85	0.9942
					Potri.016G032550 [exp]	15.65	0.9882
AT5G05800			unknown protein		Potri.014G061450 [exp]	16.97	0.9939
AT1G71350			eukaryotic translation initiat...		Potri.013G096600 [exp]	18.57	0.9759
					Potri.009G020201 [exp]	18.76	0.9939

Compare expression of checked genes

Potri.004G073400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.