Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52650 179 / 1e-57 RNA binding Plectin/S10 domain-containing protein (.1) AT4G25740 178 / 1e-57 RNA binding Plectin/S10 domain-containing protein (.1.2) AT5G41520 168 / 1e-53 RNA binding Plectin/S10 domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G027900 [exp] 203 / 3e-67 AT5G52650 179 / 8e-58 RNA binding Plectin/S10 domain-containing protein (.1) Potri.005G040100 [exp] 202 / 1e-66 AT4G25740 177 / 2e-57 RNA binding Plectin/S10 domain-containing protein (.1.2) Potri.017G146700 [exp] 198 / 3e-65 AT4G25740 180 / 1e-58 RNA binding Plectin/S10 domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039282 [exp] 194 / 2e-63 AT4G25740 236 / 1e-80 RNA binding Plectin/S10 domain-containing protein (.1.2) Lus10038846 [exp] 189 / 9e-59 AT5G52660 292 / 2e-96 Homeodomain-like superfamily protein (.1.2) Lus10024669 [exp] 191 / 2e-58 AT1G63910 260 / 2e-82 myb domain protein 103 (.1) Lus10032298 [exp] 189 / 5e-58 AT1G63910 260 / 2e-82 myb domain protein 103 (.1) Lus10014966 [exp] 163 / 3e-50 AT4G25740 216 / 5e-71 RNA binding Plectin/S10 domain-containing protein (.1.2) Lus10027519 [exp] 109 / 6e-31 AT4G25740 104 / 8e-30 RNA binding Plectin/S10 domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF03501 [poplar] [flax] S10_plectin Plectin/S10 domain
Representative CDS sequence Show only first row Show all	>Potri.004G073500.1 pacid=42794694 polypeptide=Potri.004G073500.1.p locus=Potri.004G073500 ID=Potri.004G073500.1.v4.1 annot-version=v4.1 ATGATTATCCCAGAGAAGAACAGAAGAGAGATCTCCAAGTACCTCTTTCAAGAGGGAGTTTGCTATGCGAAAAAAGATTTCAACCTTGCAAAGCACCCAG AGATTGATGTTCCCAATCTCCAGGTTATTAAGCTCATGCAGAGCTTCAAATCTAAGGAATATGTTCGTGAGACATTTGCATGGATGTACTACTACTGGTA TCTTACCAATGATGGGATTGAGTTTTTGAGGACTTACCTGAATCTTCCATCAGAAATTGTTCCTGCTACCTTGAAGAAACAGGCAAAGCCTGCTGGTGGT CGCCCATTTGGAGGCCCACCTGGTGACCGTCCCCGAGGTCCACCTCGCTTTGAAGGAGACCGTCCTAGATTTGGTGACCGTGATGGTTATCGTGGGGGCC CTCGAGGGGGTGAAGGTGGTGAGAAGGGAGGAGCTCCAGCAGATTACCAGCCTGCATTTAGGGGCTCTGGCTCTGGTGGAAGGCCTGGCTTTGGACGTGG AGGAGGAGGTTATGGTGCTGCTCAATCTAGTTCTCCTGGTTTTGCTTGA
AA sequence Show only first row Show all	>Potri.004G073500.1 pacid=42794694 polypeptide=Potri.004G073500.1.p locus=Potri.004G073500 ID=Potri.004G073500.1.v4.1 annot-version=v4.1 MIIPEKNRREISKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMYYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGG RPFGGPPGDRPRGPPRFEGDRPRFGDRDGYRGGPRGGEGGEKGGAPADYQPAFRGSGSGGRPGFGRGGGGYGAAQSSSPGFA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25740			RNA binding Plectin/S10 domain...		Potri.004G073500 [exp]	0	1
AT5G02960			Ribosomal protein S12/S23 fami...		Potri.016G085800 [exp]	1.41	0.9778	Pt-RPS23.5
AT3G02560			Ribosomal protein S7e family p...		Potri.017G115400 [exp]	2.23	0.9795
AT5G02960			Ribosomal protein S12/S23 fami...		Potri.006G131500 [exp]	2.44	0.9763
AT3G02560			Ribosomal protein S7e family p...		Potri.004G099200 [exp]	4.00	0.9740
AT3G56340			Ribosomal protein S26e family ...		Potri.019G057000 [exp]	4.47	0.9698	RPS26.2
AT1G09690			Translation protein SH3-like f...		Potri.003G159500 [exp]	6.00	0.9631	RPL21.1
AT2G27710			60S acidic ribosomal protein f...		Potri.004G185800 [exp]	6.00	0.9694
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Potri.016G082300 [exp]	6.24	0.9622
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Potri.005G206300 [exp]	7.34	0.9557	Pt-RPS12.3
AT5G24510			60S acidic ribosomal protein f...		Potri.012G021700 [exp]	7.87	0.9523

Compare expression of checked genes

Potri.004G073500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.