Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01540 240 / 4e-74 Protein kinase superfamily protein (.1.2) AT4G01330 229 / 9e-70 Protein kinase superfamily protein (.1.2) AT4G02630 213 / 2e-63 Protein kinase superfamily protein (.1) AT4G34500 206 / 2e-61 Protein kinase superfamily protein (.1) AT2G30940 199 / 1e-58 Protein kinase superfamily protein (.1.2) AT1G56720 189 / 1e-54 Protein kinase superfamily protein (.1.2.3) AT2G42960 187 / 7e-54 Protein kinase superfamily protein (.1) AT1G09440 186 / 1e-53 Protein kinase superfamily protein (.1) AT5G18500 184 / 1e-52 Protein kinase superfamily protein (.1.2) AT3G59110 181 / 4e-51 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G146000 [exp] 408 / 5e-139 AT1G01540 400 / 5e-136 Protein kinase superfamily protein (.1.2) Potri.014G088800 [exp] 249 / 2e-77 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G139500 [exp] 218 / 6e-66 AT4G02630 477 / 2e-166 Protein kinase superfamily protein (.1) Potri.009G115600 [exp] 207 / 2e-61 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1) Potri.004G154000 [exp] 206 / 6e-61 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1) Potri.014G026100 [exp] 206 / 8e-61 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.005G203300 [exp] 192 / 3e-55 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.008G214200 [exp] 187 / 6e-54 AT5G18500 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G003300 [exp] 187 / 1e-53 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036386 [exp] 231 / 3e-70 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2) Lus10007919 [exp] 229 / 1e-69 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024813 [exp] 223 / 7e-67 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10018722 [exp] 219 / 1e-65 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10040459 [exp] 205 / 2e-61 AT4G34500 549 / 0.0 Protein kinase superfamily protein (.1) Lus10041593 [exp] 206 / 1e-60 AT4G01330 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012664 [exp] 200 / 5e-60 AT4G02630 511 / 0.0 Protein kinase superfamily protein (.1) Lus10042324 [exp] 206 / 5e-58 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1) Lus10023574 [exp] 188 / 9e-55 AT4G34500 547 / 0.0 Protein kinase superfamily protein (.1) Lus10001423 [exp] 189 / 3e-54 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G073801.1 pacid=42794050 polypeptide=Potri.004G073801.1.p locus=Potri.004G073801 ID=Potri.004G073801.1.v4.1 annot-version=v4.1 ATGCAACACATCATCTATTTAACAACAAGATATCAAAGCACACCTCATACTTGCTTTGATTGTTGTCCTTACTGTTCTCTTTTGGTCATCATCGTTGCTT GGATCATCTATCTCTGTCGCCGAAAATCGAAACCTTTCAAGCCCCATTTTCGCTTATCGAACCCCCTTTCGACGAAAGACTTTAAAAATTCTTGCACTAC TCCTTCCATGGATAAAAGGTTTTTGTCGCATCGAATCTCGGAGGTTGAAATGAAGAATGCGAAGTTAGACCGTCAACTGCTTATTTGGAGTTCTAGTCAC TCTTCTGTGGTTCCTGATACATGGAGGGGAGACCGGATTGCTTTGAAGGAGATTGAGGTTGTTGCGGATGGTTTTGCTGATAAGAATCTGATTGGAAGTG GAAATTGTGGTGTTGTGTATCGCGGCGTGATGTTGGATGCTACCAGAGTGGTGCTTAATTTTGAATCTCTAATCTATACTAAATTGTTATTTATCTCAAT CTTCTGCTTGTTTCTCCCTTCTATTAGAATTCTTGTGAGCGACTATGTTGATAATGGTAATCTGCATCAATGGCTTTATGGATTTTCTGAACAAGTCAGC CCTCTAACATGGGCTATACGGATGAGCATCATCCGAGGAATAGCTAAAGGATTAGCCTACCTTCCCGAAGATATCGAGCCAAAGATTATTCATCAGAACC TAAAATCTAGCAACATAATGCTTGATCGCCAGTGCAATCCTAAGATAAATTATTTTGGGATCACTAACAATTCACTCAATGGAAACATCTGGGAATCTTG CCCTGGTTACTGTAATTATCTAGCTCAAGCAAACAAATCTGCTGGAGTTCTGAGTGAAAAGAGCGATGTTTACAGCTTTGGAATACTTGTCATGGAGATC ATATGTGCTCGAGTTCCTGTAGATCACAATCGGCCTCAAGTTTTTTTGGTTGACTGGTTAACTTCCATGATTGCAAATAAACAAATTGCGCTTGTGGTGG ATCCTAAATTGCCAGATATGCCACCTTCCAAGGAACTAAAACGAATGCTTTTGCTCGCTCTTCGCTATGTGATCCACATGCATGAGCCTCGCGACTTATT GCTTGATGATGCAAGAACTAAGAATATTGTCTTCTTAAAACTTCAGAACACGTTGGTTTTATTAGTCCGATTATATGATGCAGGATCGTCGAAAAGGAGA GATGGCTCATCTCGTCGAAAAAAGCAGCAAGAGAGTCACACTGTTGCCAAATTTGGTGAAGGTGATTTTAGTACACATGAGAAAGAAAGAAAGAAAGGAA GAAAGAAAGAAAGATTAATCTACACCAGAAAATCACGCCGGTGTAAGAAGATTTTGTTCCTAAAAGATCATGGATAA
AA sequence Show only first row Show all	>Potri.004G073801.1 pacid=42794050 polypeptide=Potri.004G073801.1.p locus=Potri.004G073801 ID=Potri.004G073801.1.v4.1 annot-version=v4.1 MQHIIYLTTRYQSTPHTCFDCCPYCSLLVIIVAWIIYLCRRKSKPFKPHFRLSNPLSTKDFKNSCTTPSMDKRFLSHRISEVEMKNAKLDRQLLIWSSSH SSVVPDTWRGDRIALKEIEVVADGFADKNLIGSGNCGVVYRGVMLDATRVVLNFESLIYTKLLFISIFCLFLPSIRILVSDYVDNGNLHQWLYGFSEQVS PLTWAIRMSIIRGIAKGLAYLPEDIEPKIIHQNLKSSNIMLDRQCNPKINYFGITNNSLNGNIWESCPGYCNYLAQANKSAGVLSEKSDVYSFGILVMEI ICARVPVDHNRPQVFLVDWLTSMIANKQIALVVDPKLPDMPPSKELKRMLLLALRYVIHMHEPRDLLLDDARTKNIVFLKLQNTLVLLVRLYDAGSSKRR DGSSRRKKQQESHTVAKFGEGDFSTHEKERKKGRKKERLIYTRKSRRCKKILFLKDHG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01540			Protein kinase superfamily pro...		Potri.004G073801 [exp]	0	1
AT5G01300			PEBP (phosphatidylethanolamine...		Potri.016G121000 [exp]	4.24	0.8295
AT1G03220			Eukaryotic aspartyl protease f...		Potri.006G068900 [exp]	14.69	0.8507
AT5G62380	NAC	ANAC101, VND6	VASCULAR-RELATED NAC-DOMAIN 6,...		Potri.006G231300 [exp]	15.96	0.8415
AT1G78160		APUM7	pumilio 7 (.1)		Potri.002G095400 [exp]	17.66	0.7886
AT1G54520			unknown protein		Potri.013G036201 [exp]	21.26	0.6575
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.006G049000 [exp]	22.51	0.8222
					Potri.009G016766 [exp]	22.73	0.8263
AT3G25910			Protein of unknown function (D...		Potri.003G060800 [exp]	25.51	0.8377
AT5G58050		GDPDL6, SVL4	Glycerophosphodiester phosphod...		Potri.018G110600 [exp]	30.00	0.7897
AT3G01060			unknown protein		Potri.004G125301 [exp]	33.04	0.7151

Compare expression of checked genes

Potri.004G073801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.