Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48950 636 / 0 Pectin lyase-like superfamily protein (.1) AT2G23900 617 / 0 Pectin lyase-like superfamily protein (.1) AT4G23500 608 / 0 Pectin lyase-like superfamily protein (.1) AT3G61490 603 / 0 Pectin lyase-like superfamily protein (.1.2.3) AT3G62110 399 / 2e-135 Pectin lyase-like superfamily protein (.1) AT4G33440 369 / 9e-124 Pectin lyase-like superfamily protein (.1) AT4G23820 362 / 2e-121 Pectin lyase-like superfamily protein (.1) AT3G42950 342 / 4e-113 Pectin lyase-like superfamily protein (.1) AT3G16850 338 / 5e-112 Pectin lyase-like superfamily protein (.1) AT5G49215 333 / 4e-110 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G145900 [exp] 666 / 0 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G162400 [exp] 617 / 0 AT3G61490 734 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.001G100000 [exp] 607 / 0 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 593 / 0 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.002G186900 [exp] 402 / 6e-137 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G112100 [exp] 402 / 8e-137 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G105800 [exp] 374 / 2e-125 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G063400 [exp] 374 / 3e-125 AT4G33440 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.018G062700 [exp] 362 / 6e-121 AT1G19170 789 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027516 [exp] 626 / 0 AT3G48950 629 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10039279 [exp] 621 / 0 AT3G48950 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10007922 [exp] 617 / 0 AT3G61490 743 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10028766 [exp] 587 / 0 AT3G61490 670 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10017517 [exp] 586 / 0 AT4G23500 675 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038030 [exp] 407 / 1e-138 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003589 [exp] 382 / 1e-128 AT4G33440 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014799 [exp] 379 / 3e-127 AT4G33440 630 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10039909 [exp] 360 / 5e-120 AT1G19170 775 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10016837 [exp] 355 / 1e-118 AT3G16850 557 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF12708 [poplar] [flax] Pectate_lyase_3 Pectate lyase superfamily protein
Representative CDS sequence Show only first row Show all	>Potri.004G073900.1 pacid=42796149 polypeptide=Potri.004G073900.1.p locus=Potri.004G073900 ID=Potri.004G073900.1.v4.1 annot-version=v4.1 ATGGAGTTTTGTTCTAAGTACAGAAAGTACCAGGTTTTGCAGATTATTATCTCAACCGTTTTCATATTGGGATCATCACTTGCTGGTTCAACACTCGCAG AATACCACCAAAATACGGTAGAGTACAAAGCGATAAATTGTCGAAAGCACAGTGCAGTTTTGACAGATTTTGGAGCAGTTGGCGATGGAAAAACATCCAA CACAAAGGCTTTTGCAGAAGCTATTAAGAAACTAAGCAAGTATGCACCAGATGGTGGAGCACAACTTATTGTACCCGCAGGAAAATGGTTAACTGGGAGT TTTAATCTCACCAGCCATTTCACTCTTTTTCTCCATAAGGATGCTGTTCTTCTTGCTTCTCAGGATGAGGATGAATGGCCACTTCTCACTCCATTGCCCT CTTACGGAGGAGTAAGAGAAAACGCTGTTTTTGGAAGACCTGGTGGTCTCATTTTTGCTTCAAACGTAACCGACGTCATAATTACTGGCAACAATGGCAC GGTTGATGGCCAGGGTGCAGTATGGTGGGAAAAGTTCAACGAGAAAAAACTGAAAAAGCTGGAGAGGCCTTATCTGATCGAGATCATGTACTCTGATCAG GTTCAAATATCGAATATAACCTTGATTAACTCTCCGCAATGGCATGTTCATCCTATTTATAGCAGCAATCTGTGGATTCAGGGGGTGACTATTCTGGCAC CGGTTGATGTTCCCAATACAGATGGGATTAACCCAGATTCATGCACTAACGTTATAATCGAAGATTGCTACATCGTATCTGGGGATGACTGCATCGCAGT TAAGAGTGGATTGGATCAATATGGAATCAAAGTTGGGATGCCTATGAAGCAACTAGTCATAAGAAGGATAACATGCATTTCCCCTAAGAGTGCTGCCATT GCTCTTGGAAGTGAAATGTCCGGTGGAATCGAGGATGTTAGAATTGAAGATATTACAGCCATTAACACTGAATCAGCTGTTCGAGTCAAAACCGCTGTAG GAAGAGGAGGTTATGTAAAAGACATTTTTGTGAGAAGAATGACCCTAAAGACAATGAAGTATGTCTTTTGGATGATAGGCTCTTATTCGTCACACGCTGA TGAGGGATATGATCCAAAAGCACTGCCTGAGATCACAAATATAAATTTCAGAGATATAGCAGCTGACAATGTAACGATTCCGGGGAAACTAGAAGGACTC GGCGAGGGAAATCCTTTTACAGGGATTTGCATTTCTAATGTAACGATGACCTTGGCTGAGAAACATAAAGAACCAGCATGGAACTGCACTGATGTATCGG GAGTTTCAAGCAATGTGACTCCCATGCCATGTGCTGCGTTGCCGAAGAAAAGCATGGATTGTCCCTTCCCAGAAGACAAACTTCCGATTGAGAAAGTTAG GCTCCAAACTTGTTCTGCCACTAGCTAG
AA sequence Show only first row Show all	>Potri.004G073900.1 pacid=42796149 polypeptide=Potri.004G073900.1.p locus=Potri.004G073900 ID=Potri.004G073900.1.v4.1 annot-version=v4.1 MEFCSKYRKYQVLQIIISTVFILGSSLAGSTLAEYHQNTVEYKAINCRKHSAVLTDFGAVGDGKTSNTKAFAEAIKKLSKYAPDGGAQLIVPAGKWLTGS FNLTSHFTLFLHKDAVLLASQDEDEWPLLTPLPSYGGVRENAVFGRPGGLIFASNVTDVIITGNNGTVDGQGAVWWEKFNEKKLKKLERPYLIEIMYSDQ VQISNITLINSPQWHVHPIYSSNLWIQGVTILAPVDVPNTDGINPDSCTNVIIEDCYIVSGDDCIAVKSGLDQYGIKVGMPMKQLVIRRITCISPKSAAI ALGSEMSGGIEDVRIEDITAINTESAVRVKTAVGRGGYVKDIFVRRMTLKTMKYVFWMIGSYSSHADEGYDPKALPEITNINFRDIAADNVTIPGKLEGL GEGNPFTGICISNVTMTLAEKHKEPAWNCTDVSGVSSNVTPMPCAALPKKSMDCPFPEDKLPIEKVRLQTCSATS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48950			Pectin lyase-like superfamily ...		Potri.004G073900 [exp]	0	1
AT2G32580			Protein of unknown function (D...		Potri.004G006500 [exp]	2.44	0.9305
AT3G24060			Plant self-incompatibility pro...		Potri.003G175200 [exp]	4.24	0.8959
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.007G078200 [exp]	8.83	0.8641	WRKY13.2
AT5G39110			RmlC-like cupins superfamily p...		Potri.009G140400 [exp]	13.03	0.8573
AT1G17170		ATGSTU24	Arabidopsis thaliana Glutathio...		Potri.001G436433 [exp]	16.73	0.8910
AT5G54370			Late embryogenesis abundant (L...		Potri.001G405650 [exp]	16.85	0.8935
AT4G23930			Late embryogenesis abundant (L...		Potri.001G090400 [exp]	19.59	0.8666
AT3G28880			Ankyrin repeat family protein ...		Potri.004G129100 [exp]	20.24	0.8526
AT1G15320			unknown protein		Potri.001G202300 [exp]	22.36	0.8655
					Potri.006G062150 [exp]	22.44	0.8866

Compare expression of checked genes

Potri.004G073900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.