Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32230 661 / 0 PRORP1 proteinaceous RNase P 1 (.1) AT2G16650 390 / 9e-130 PRORP2 proteinaceous RNase P 2 (.1) AT4G21900 378 / 2e-124 PRORP3 proteinaceous RNase P 3 (.1) AT5G60430 72 / 1e-14 drug transmembrane transporters;antiporters (.1.2) AT1G12300 54 / 3e-07 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02150 54 / 4e-07 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G04760 52 / 1e-06 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63320 50 / 1e-06 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09680 50 / 5e-06 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G19890 50 / 6e-06 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G144900 [exp] 986 / 0 AT2G32230 671 / 0.0 proteinaceous RNase P 1 (.1) Potri.006G160300 [exp] 400 / 3e-129 AT2G32230 404 / 1e-130 proteinaceous RNase P 1 (.1) Potri.009G145200 [exp] 385 / 3e-127 AT2G16650 568 / 0.0 proteinaceous RNase P 2 (.1) Potri.004G185200 [exp] 375 / 2e-123 AT2G16650 573 / 0.0 proteinaceous RNase P 2 (.1) Potri.009G105600 [exp] 58 / 2e-08 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G131600 [exp] 54 / 2e-07 AT4G11690 632 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G034200 [exp] 53 / 5e-07 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.019G103400 [exp] 52 / 7e-07 AT1G03560 911 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G066700 [exp] 51 / 2e-06 AT1G20300 213 / 5e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039049 [exp] 664 / 0 AT2G32230 627 / 0.0 proteinaceous RNase P 1 (.1) Lus10038809 [exp] 654 / 0 AT2G32230 615 / 0.0 proteinaceous RNase P 1 (.1) Lus10038817 [exp] 548 / 0 AT2G32230 555 / 0.0 proteinaceous RNase P 1 (.1) Lus10014928 [exp] 500 / 5e-173 AT2G32230 503 / 1e-174 proteinaceous RNase P 1 (.1) Lus10043223 [exp] 415 / 2e-135 AT2G32230 433 / 2e-142 proteinaceous RNase P 1 (.1) Lus10019535 [exp] 380 / 1e-125 AT4G21900 607 / 0.0 proteinaceous RNase P 3 (.1) Lus10043379 [exp] 259 / 9e-82 AT4G21900 369 / 7e-125 proteinaceous RNase P 3 (.1) Lus10018567 [exp] 57 / 3e-08 AT1G03560 862 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10039799 [exp] 56 / 6e-08 AT1G03560 473 / 5e-164 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10006850 [exp] 52 / 2e-06 AT1G51965 782 / 0.0 ABA Overly-Sensitive 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0280 [poplar] [flax] PIN PF11977 [poplar] [flax] RNase_Zc3h12a Zc3h12a-like Ribonuclease NYN domain CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.004G074100.1 pacid=42795821 polypeptide=Potri.004G074100.1.p locus=Potri.004G074100 ID=Potri.004G074100.1.v4.1 annot-version=v4.1 ATGCTGCTGTGTAGAAGCAGTACTTTTTTTGCACCTTCTTTTAATGCAAAAACCTCTCAAAATTTTTGCTCTTACTTCACTAAGAAAACCCATTTGCTTT CATTCTTTAAGAATAGCCCCATCTGCTGTAATCATAGTTATTTATTTGCAAAACACATAAAGGATTCAAACTTTATTGGAGCCCATAATTTGTTCATGAA GAAAAAGGCCACATTTTGCAACTCGGCAATCTCTGCGACATCGCAGAGTGATGAGAAAGCTGTGGGTGGGAATGTAGTTTCTAAAAGGTTGAAAAAGAAA GCGCGGCGAGATGCGCCAGAGGGAGTGCTTAGGTTTAAGCTAGATATGTGTTCGAAAGTTGGCGATGTTGTTGAAGGGCTTAGGTTGTATGATGAGGCAA GGAGGAATGGGGTTGAGCTTAATCAACACCATTATAATGTGATGCTTTATTTGTGCTCTCAAAATAGAGGTGAAAATGGAAGTGATTTGAAGTTGGCTTG TAAAAGGGGTTTCGAGATATTTCAGCAGATGATTATTGATAAAGTTCCTCCTAACGAGGCTACATTTACAAATGCGGCAAGGTTGGCTTCTGTAATGGAA GATCCAGAAATGGCTTTTGATTTGGTAAAGCAAATGAAGGGTTTTGGTATTATGCCGAAGCTGAGGTCTTATGGTCCACCTTTGTTTGGATTTTGTAAGA AAGGGATGGTTGATAAAGCTTATGAAGTTGATGCACATATGATTGAATCTGGGGTTGTGGCTGAAGAGCCTGAGCTTTCCTCTCTTTTGAAACTTAGTGC TGATGTAAACAATGCTGACAAGATGTATGAATTGCTGCATCGGTTGCGAACCTCTGTGAGGCAGGTTATGGAGTCAACTGTAGGGGTTATTGAAGATTGG TTCAAGTCTGAGCATGCTGCAAAAATTGGGAAGGGGGATTGGGATGTGATTAAGGTGAAGGAAGGAGTTGTAAGGGGAGGGGGAGGTTGGCATGGACAAG GGTGGTTAGGGCATGGACAGTGGAGAGTGGTCAGGACTCAAATGGATAAGAAGGGTGTTTGTGGTTCTTGTGGTGAGAGACTTGCTTGTATTGATATCGA TCCAAGAGAGACAGAAAACTTTGCTATCTCATTATCTAAGTTGGCTTTTGGAAGAGAGGTTAAGGCTGATTTTATTCAGTTCCAGGAGTGGCTGCAGCAG CATGGTCCATTTGATGCAGTTGTAGATGGAGCTAATGTTAGTCTTATCAATCAACAGACTTTCAACTTTTCCCAGCTTAATAATGTTGTAAATCGATTAC ATGATATGAGTCCATCCAAGAAATTTCCACTAGTTATTTTGCACAAAAGTCGTGTAAATGGGGGTCCAGCTCAGAGTCCTTATAACAAGAAATTGCTAGA GAGGTGGAAAAATTCTGGTGCACTTTATGCTACTCCGGCTGGTTCCAATGATGATTGGTACTGGTTATATGCTGCTGTTAGTTGCAAGTGTTTACTGGTG ACAAATGATGAAATGAGGGACCACTTGTTCCAGTTGCTAGGGACTTCCTTTTTTCCAAGATGGAAGGAAAAGCATCAGGTTCGGCTCTCGGTATCACGAT CTGGAATTGCTCTGCACATGCCTCCGCCGTATTCAATTGTTATTCAGGAATCAGAAAATGGTGGTTGGCATGTCCCAACAACCACAGGCGATGATCTTGA GACTCCAAGACAGTGGTTGTGTGCCACCCGACCTGTCAAAAGATGA
AA sequence Show only first row Show all	>Potri.004G074100.1 pacid=42795821 polypeptide=Potri.004G074100.1.p locus=Potri.004G074100 ID=Potri.004G074100.1.v4.1 annot-version=v4.1 MLLCRSSTFFAPSFNAKTSQNFCSYFTKKTHLLSFFKNSPICCNHSYLFAKHIKDSNFIGAHNLFMKKKATFCNSAISATSQSDEKAVGGNVVSKRLKKK ARRDAPEGVLRFKLDMCSKVGDVVEGLRLYDEARRNGVELNQHHYNVMLYLCSQNRGENGSDLKLACKRGFEIFQQMIIDKVPPNEATFTNAARLASVME DPEMAFDLVKQMKGFGIMPKLRSYGPPLFGFCKKGMVDKAYEVDAHMIESGVVAEEPELSSLLKLSADVNNADKMYELLHRLRTSVRQVMESTVGVIEDW FKSEHAAKIGKGDWDVIKVKEGVVRGGGGWHGQGWLGHGQWRVVRTQMDKKGVCGSCGERLACIDIDPRETENFAISLSKLAFGREVKADFIQFQEWLQQ HGPFDAVVDGANVSLINQQTFNFSQLNNVVNRLHDMSPSKKFPLVILHKSRVNGGPAQSPYNKKLLERWKNSGALYATPAGSNDDWYWLYAAVSCKCLLV TNDEMRDHLFQLLGTSFFPRWKEKHQVRLSVSRSGIALHMPPPYSIVIQESENGGWHVPTTTGDDLETPRQWLCATRPVKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Potri.004G074100 [exp]	0	1
AT1G31190		IMPL1	myo-inositol monophosphatase l...		Potri.015G120400 [exp]	1.00	0.7897
AT4G37760		SQE3	squalene epoxidase 3 (.1)		Potri.007G007600 [exp]	3.74	0.7849
AT5G59770			Protein-tyrosine phosphatase-l...		Potri.001G235400 [exp]	4.89	0.7715
AT3G23600			alpha/beta-Hydrolases superfam...		Potri.008G201400 [exp]	8.48	0.7333
AT2G40860			protein kinase family protein ...		Potri.016G030800 [exp]	8.83	0.7329
AT1G78560			Sodium Bile acid symporter fam...		Potri.003G008700 [exp]	10.09	0.7844
AT1G15390		PDF1A, ATDEF1	peptide deformylase 1A (.1)		Potri.001G171800 [exp]	10.24	0.7505	PDF1.2
AT1G44790			ChaC-like family protein (.1)		Potri.005G176300 [exp]	10.39	0.7207
AT4G31270	Trihelix		sequence-specific DNA binding ...		Potri.006G279100 [exp]	10.58	0.7262
					Potri.008G148266 [exp]	13.60	0.7636

Compare expression of checked genes

Potri.004G074100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.