Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17300 218 / 3e-66 MYB RVE1 REVEILLE 1, Homeodomain-like superfamily protein (.1) AT5G37260 174 / 1e-50 MYB RVE2, CIR1 REVEILLE 2, CIRCADIAN 1, Homeodomain-like superfamily protein (.1) AT1G18330 150 / 7e-41 MYB RVE7, EPR1 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) AT3G10113 143 / 2e-38 MYB Homeodomain-like superfamily protein (.1) AT2G46830 124 / 2e-30 MYB AtCCA1, CCA1 circadian clock associated 1 (.1.2) AT1G01060 124 / 3e-30 MYB LHY, LHY1 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) AT5G52660 100 / 2e-23 MYB Homeodomain-like superfamily protein (.1.2) AT3G09600 100 / 2e-23 MYB LCL5 (LHY-CCA1-LIKE5), REVEILLE 8 (RVE8) REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) AT4G01280 99 / 6e-23 MYB Homeodomain-like superfamily protein (.1.2) AT1G01520 97 / 4e-22 MYB ASG4 ALTERED SEED GERMINATION 4, Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G144800 [exp] 724 / 0 AT5G17300 200 / 2e-59 REVEILLE 1, Homeodomain-like superfamily protein (.1) Potri.012G038300 [exp] 258 / 1e-80 AT1G18330 158 / 5e-44 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.015G030400 [exp] 241 / 7e-74 AT1G18330 170 / 1e-48 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.014G106800 [exp] 131 / 2e-32 AT1G01060 378 / 3e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Potri.002G180800 [exp] 130 / 4e-32 AT1G01060 369 / 1e-117 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Potri.006G133000 [exp] 103 / 2e-24 AT3G09600 379 / 1e-132 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.016G083900 [exp] 100 / 5e-23 AT3G09600 375 / 4e-131 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.002G163100 [exp] 100 / 5e-23 AT4G01280 266 / 1e-87 Homeodomain-like superfamily protein (.1.2) Potri.014G089300 [exp] 99 / 2e-22 AT4G01280 293 / 2e-98 Homeodomain-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026365 [exp] 199 / 7e-59 AT1G18330 193 / 6e-58 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10042292 [exp] 198 / 2e-58 AT1G18330 198 / 5e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10031893 [exp] 193 / 2e-56 AT3G10113 207 / 2e-63 Homeodomain-like superfamily protein (.1) Lus10031322 [exp] 165 / 1e-45 AT1G18330 199 / 4e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10030184 [exp] 128 / 2e-32 AT1G01060 247 / 2e-75 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10005134 [exp] 126 / 1e-30 AT1G01060 377 / 5e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10010100 [exp] 122 / 2e-29 AT1G01060 399 / 4e-130 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10036392 [exp] 103 / 3e-24 AT5G52660 306 / 5e-103 Homeodomain-like superfamily protein (.1.2) Lus10007914 [exp] 103 / 4e-24 AT5G52660 301 / 8e-101 Homeodomain-like superfamily protein (.1.2) Lus10027521 [exp] 100 / 2e-23 AT5G52660 353 / 1e-122 Homeodomain-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G074300.1 pacid=42794327 polypeptide=Potri.004G074300.1.p locus=Potri.004G074300 ID=Potri.004G074300.1.v4.1 annot-version=v4.1 ATGGCTATTCAGGATCAGTGTGGAGGGACTCGACTGAATCTGGTTCTCCCAGCAGGCAATGGAATTTCACTGAGTGCTCCACTAAATAATGCATCTGGGC AGCAACTAAAGGAGCAATTCTCTTGTGGGAGTGATTACTCTCCCAAGGCGAGGAAACCATACACCATCACGAAGCAAAGAGAAAGATGGACAGAGGAAGA GCATAAGAAGTTCCTTGAAGCTCTAAAGCTTTATGGTCGCGCTTGGAGACGGATTGAAGAGCATGTTGGCACAAAGACTGCGGTTCAGATTCGAAGCCAT GCTCAGAAATTCTTCTCTAAGGTTGTGCGTGAGTCTGGTGGCAGCAACACTAGCTCAGTGGAACCAATTGAAATTCCTCCTCCTAGACCAAAGCGAAAAC CTATGCATCCTTACCCCCGCAAATTGGCACATCCTCTAGAAAAAGAGCTCCTTATTCCTGAGAAGTCACTAAGGTCTTCTTCTCCAAATTTTTCCATTTC AGAACAGGAAAACCAATCTCCAACATCAGTATTGTCTGCAGTTGGTTCAGATGCCCTCGGTTCCACTGATTCAGACACACCAAACCACAGCTTATCGCCA GTTTCATTTGCTGGTGGTGTTCATCATGCTGATTCCTCTCCTGAAGAGGATGGATCTCCATCACCAGCAACTGCTAGTTCAGTTCCTGATGAGCAATTTC CCAAGGTCGAGAAACTTGACTCCTCTCCCGAAGAAAATGTGTCTTCTGACGAACCTGTTGTTGAGGAAACATCAACTCGGAGTCTGAAGCTCTTTGGAAG GACAGTATTAGTCACAGAATGGCATAAACCATCTTCTCCAAACATGGGAACTTCTAAATTGTCTACACCAGACGCTGCAGAAGAAAAACTTGTGCGACCA TTAACACTGAACAATGTGGCCGCAGAATTTCCGTTCAGGAATGGGGAATCCACTTGGAGTCCTTTGCCACATGGATCTCATGGAGCATTATGTTACAAGA AATTTCAAAAGGAAAACTCAAGTCCTGCACAAAATGACTCTGCTCCTCTGCCTTGGTGGACTCTTTATGGAGCCATGCCATTTCCTTGCATACCATTTCA CAAGAAAGAGCCCGCAATAGAAAATTTAGATTCAAAAGGAGATGAAGTCCAAGATAAAGAGATTCCAAAGGAAGTATCTTGGACTGGCTCCAACTCTGGA TTAGTGAGTGAAGGGGAAAACGTAGATAAAAACATGGATGCTGAGACCGAAAGTCAACAATTTTCTTACGAGGAAAAAGAGCTATCCCCAATTTTTGAGC TTAAGCTAACCAGGAAATCAGCCTCATCTGGATCAAAAGTGATCAATGAAAAGTGTCCGAAAGGGTTTGTGCCTTACAAGAAACGAATTGCAGAAAGAGA CAGCCAATCCTCAACAATAACCGGTGAAGAGAGGGAAGAGCAAAGAATCCGCCTTTGCCTGTAG
AA sequence Show only first row Show all	>Potri.004G074300.1 pacid=42794327 polypeptide=Potri.004G074300.1.p locus=Potri.004G074300 ID=Potri.004G074300.1.v4.1 annot-version=v4.1 MAIQDQCGGTRLNLVLPAGNGISLSAPLNNASGQQLKEQFSCGSDYSPKARKPYTITKQRERWTEEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSH AQKFFSKVVRESGGSNTSSVEPIEIPPPRPKRKPMHPYPRKLAHPLEKELLIPEKSLRSSSPNFSISEQENQSPTSVLSAVGSDALGSTDSDTPNHSLSP VSFAGGVHHADSSPEEDGSPSPATASSVPDEQFPKVEKLDSSPEENVSSDEPVVEETSTRSLKLFGRTVLVTEWHKPSSPNMGTSKLSTPDAAEEKLVRP LTLNNVAAEFPFRNGESTWSPLPHGSHGALCYKKFQKENSSPAQNDSAPLPWWTLYGAMPFPCIPFHKKEPAIENLDSKGDEVQDKEIPKEVSWTGSNSG LVSEGENVDKNMDAETESQQFSYEEKELSPIFELKLTRKSASSGSKVINEKCPKGFVPYKKRIAERDSQSSTITGEEREEQRIRLCL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17300	MYB	RVE1	REVEILLE 1, Homeodomain-like s...		Potri.004G074300 [exp]	0	1
AT3G24520	HSF	AT-HSFC1	heat shock transcription facto...		Potri.018G079901 [exp]	2.00	0.8305
AT5G17300	MYB	RVE1	REVEILLE 1, Homeodomain-like s...		Potri.017G144800 [exp]	3.31	0.7951
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Potri.010G157900 [exp]	4.00	0.8183
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Potri.015G084000 [exp]	4.69	0.8349
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Potri.017G088300 [exp]	23.55	0.8251
AT5G06370			NC domain-containing protein-r...		Potri.006G203300 [exp]	24.33	0.7831
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Potri.006G134300 [exp]	30.38	0.7846
					Potri.009G060901 [exp]	31.01	0.7774
AT4G32020			unknown protein		Potri.018G022400 [exp]	32.32	0.7815
AT2G38410			ENTH/VHS/GAT family protein (....		Potri.016G131900 [exp]	32.48	0.8178

Compare expression of checked genes

Potri.004G074300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.