Plant FIBer expression Database

Potri.004G074400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G17310 759 / 0 AtUGP2, UGP2 UDP-glucose pyrophosphorylase 2 (.1.2)
AT3G03250 753 / 0 AtUGP1, UGP1, UGP UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G144700
[exp]
828 / 0 AT5G17310 782 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2)
Potri.013G070001
[exp]
352 / 5e-115 AT3G03250 375 / 9e-124 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
Potri.004G074750
[exp]
241 / 8e-79 AT5G17310 222 / 2e-72 UDP-glucose pyrophosphorylase 2 (.1.2)
Potri.004G074602
[exp]
44 / 1e-05 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007370
[exp]
751 / 0 AT5G17310 785 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2)
Lus10020788
[exp]
749 / 0 AT5G17310 781 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2)
Lus10010957
[exp]
644 / 0 AT3G03250 676 / 0.0 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
Lus10031365
[exp]
631 / 0 AT3G03250 662 / 0.0 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
Lus10041971
[exp]
303 / 7e-96 AT5G17310 332 / 6e-107 UDP-glucose pyrophosphorylase 2 (.1.2)
Lus10031368
[exp]
54 / 6e-09 AT3G03250 49 / 3e-08 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0110 GT-A PF01704 UDPGP UTP--glucose-1-phosphate uridylyltransferase
Representative CDS sequence
>Potri.004G074400.5 pacid=42795313 polypeptide=Potri.004G074400.5.p locus=Potri.004G074400 ID=Potri.004G074400.5.v4.1 annot-version=v4.1
ATGGCTACTGATACCGAGAAGATCTCTCAGCTCAAATCCGCTGTTGCTAATCTCAATCAAATCAGTGAGAGTGAGAAAACTGGATTCGTCAACCTCGTAT
CTCGCTATCTCAGTGGGGAAGCGCAGCAAGTTGAGTGGAGTAAGATTCAGACACCTACTGATGAAGTAGTGGTTCCTTATGATACCTTGGAGTCAACTCC
TGAGGAACCGGAGGAAACCAAGATGCTTTTGGACAAGCTTGTTGTTTTGAAGCTTAATGGAGGTTTGGGGACAACAATGGGATGCACTGGTCCTAAGTCT
GTCATTGAAGTTCGTAATGGACTGACATTTCTTGACCTTATTGTCATCCAGATCGAGAGTCTTAACAAGAAATATGGGTGCAGCGTTCCCTTGCTTCTAA
TGAACTCATTCAACACTCATGATGATACACAGAAGATTATTGAGAAGTACTCAAACTCAAATATTGAGATTCACACCTTTAATCAGAGCCAATATCCTCG
TCTGGTTGCTGATGATTTTGTGCCATTGCCTTCAAAAGGACACACTGACAAGGATGGATGGTATCCTCCTGGACATGGTGATGTGTTCCCATCTCTAAAG
AACAGTGGCAAGCTCGATGCTTTATTGTCACAGGGTAAAGAGTATGTATTTGTTGCCAACTCAGATAACCTCGGTGCTGTTGTTGATTTGAAAATCTTAA
ACCATCTGATCAGAAACAAGAATGAATACTGCATGGAGGTGACACCCAAAACCTTGGCTGATGTGAAGGGTGGTACTCTCATCTCTTATGAAGGGAAGGT
TCAGCTCCTGGAAATTGCACAGGTCCCTGATCAGCATGTCAATGAGTTCAAGTCGATTGAGAAGTTCAAAATTTTCAATACAAACAACTTATGGGTGAAC
TTGAAGGCAATCAAAAGGCTTGTGGAAGCTGATGCACTTAAGATGGAGATTATTCCAAACCCAAAGGAAGTGGATGGAGTCAAAGTTCTTCAGCTAGAAA
CTGCAGCTGGAGCAGCAATTAAGTTCTTTGACCATGCAATTGGTATAAATGTACCTAGATCTCGATTCCTTCCAGTGAAGGCTTCTTCAGATTTGCTTCT
TGTTCAGTCTGATCTTTACACTGTAGTTGATGGCTTTGTCATCCGAAATCCAGCTAGAACAAATCCTGCAAATCCTTCTATCGAACTGGGGCCAGAATTT
AAGAAGGTTGCCAACTTCTTGAGCCGATTTAAGTCAATCCCTAGCATCATTGAGCTTGATAGTCTTAAGGTTGCTGGTGATGTATGGTTTGGTGCTAATA
TTACTCTCAAGGGAAAAGTGAGCATCGTGGTGAAATCTGGTGTGAAACTGGAAATACCAGAGGGAGTCGTTCTTGAAAACAAGGAAATTAATGGCCCAGA
GGACCTCTAA
AA sequence
>Potri.004G074400.5 pacid=42795313 polypeptide=Potri.004G074400.5.p locus=Potri.004G074400 ID=Potri.004G074400.5.v4.1 annot-version=v4.1
MATDTEKISQLKSAVANLNQISESEKTGFVNLVSRYLSGEAQQVEWSKIQTPTDEVVVPYDTLESTPEEPEETKMLLDKLVVLKLNGGLGTTMGCTGPKS
VIEVRNGLTFLDLIVIQIESLNKKYGCSVPLLLMNSFNTHDDTQKIIEKYSNSNIEIHTFNQSQYPRLVADDFVPLPSKGHTDKDGWYPPGHGDVFPSLK
NSGKLDALLSQGKEYVFVANSDNLGAVVDLKILNHLIRNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDQHVNEFKSIEKFKIFNTNNLWVN
LKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIKFFDHAIGINVPRSRFLPVKASSDLLLVQSDLYTVVDGFVIRNPARTNPANPSIELGPEF
KKVANFLSRFKSIPSIIELDSLKVAGDVWFGANITLKGKVSIVVKSGVKLEIPEGVVLENKEINGPEDL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G17310 AtUGP2, UGP2 UDP-glucose pyrophosphorylase ... Potri.004G074400
[exp]
0 1
AT1G23190 PGM3 phosphoglucomutase 3, Phosphog... Potri.008G132500
[exp]
3.74 0.9179
AT3G42050 vacuolar ATP synthase subunit ... Potri.013G078700
[exp]
3.74 0.9223
AT1G12840 ATVHA-C, DET3 DE-ETIOLATED 3, ARABIDOPSIS TH... Potri.017G061100
[exp]
4.89 0.9073
AT4G32530 ATPase, F0/V0 complex, subunit... Potri.006G248700
[exp]
5.00 0.9075
AT5G60620 GPAT9 glycerol-3-phosphate acyltrans... Potri.009G143200
[exp]
5.56 0.8839
AT4G01100 ADNT1 adenine nucleotide transporter... Potri.002G168100
[exp]
7.93 0.9044
AT5G59890 ADF4, ATADF4 actin depolymerizing factor 4 ... Potri.009G028200
[exp]
11.40 0.9008 Pt-ADF1.1
AT5G03300 ADK2 adenosine kinase 2 (.1) Potri.010G224300
[exp]
12.96 0.9176 ADK2.2
AT4G31300 PBA1 N-terminal nucleophile aminohy... Potri.006G077900
[exp]
14.00 0.9062 PBA1.2
AT3G13410 unknown protein Potri.001G000900
[exp]
18.11 0.9059

Potri.004G074400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.