Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73360 639 / 0 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT1G17920 612 / 0 HD HDG12 homeodomain GLABROUS 12 (.1) AT3G03260 602 / 0 HD HDG8 homeodomain GLABROUS 8 (.1) AT4G04890 553 / 0 HD PDF2 protodermal factor 2 (.1) AT4G21750 542 / 0 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G05230 537 / 0 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT5G17320 533 / 0 HD HDG9 homeodomain GLABROUS 9 (.1) AT1G34650 517 / 5e-175 HD HDG10 homeodomain GLABROUS 10 (.1) AT4G00730 501 / 2e-167 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT3G61150 484 / 9e-161 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G144601 [exp] 881 / 0 AT1G73360 494 / 2e-167 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.015G034100 [exp] 717 / 0 AT1G73360 927 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.012G038500 [exp] 707 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.014G152000 [exp] 556 / 0 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.002G230200 [exp] 554 / 0 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.004G020400 [exp] 548 / 0 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.002G154700 [exp] 545 / 0 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G075200 [exp] 542 / 0 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.011G025000 [exp] 539 / 0 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031321 [exp] 725 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10007650 [exp] 545 / 0 AT4G04890 1121 / 0.0 protodermal factor 2 (.1) Lus10006765 [exp] 544 / 0 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10039667 [exp] 539 / 0 AT1G05230 1142 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10020059 [exp] 538 / 0 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10027175 [exp] 537 / 0 AT1G05230 1138 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10031892 [exp] 504 / 5e-171 AT1G73360 618 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10036567 [exp] 464 / 3e-153 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10027437 [exp] 448 / 2e-147 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005759 [exp] 442 / 4e-145 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0209 [poplar] [flax] Bet_v_1_like PF01852 [poplar] [flax] START START domain
Representative CDS sequence Show only first row Show all	>Potri.004G074800.3 pacid=42796478 polypeptide=Potri.004G074800.3.p locus=Potri.004G074800 ID=Potri.004G074800.3.v4.1 annot-version=v4.1 ATGGAGCTTTCAATGGGAAACAATGGTGGCGCTTCGGGCGATGAACATGAAGCAGCTTCTAACTCTAGAAATCAGGGAAATAAGGCTTACCATCGCCATT CTAATCAACAGATTCATCAGCTTGAAAAATTTTTCAAGGAATGTCCACATCCGGATGAAAACCAGCGGCGCCAGTTGAGTAGGGAATTAGGGCTTGAGGC TAAACAGATCAAGTTCTGGTTTCAAAACAAAAGGACTCAGAAAAAGGCGCAGAGTGAGCGAGCAGATAATTCAGTTCTTCGGTTAGAAAATGAGAGGATT CAATGTGAAAATCTGGCAATCATAGAGGCACTGAAGAATGTGATCTGCCCAGCTTGTGGAGGTCCTCCCTTCGGAGAAGAAGAACGCCAACGTAGTTTGC AGAAACTAAAGCAGGAAAATGCTCGGTTGAAAGAAGAGCATGAAAAGGTATCCACCCTTCTTACCAAGTACATAGGAAAATCGATTTCACAGATTGATTC GTTGACACCTGGCGCTGGATCTTCACATGGCGTATTGACAACAAACCCTGGCATTGATCTGGAACGGAATCCAGGACTGGACAACAGTCAGTTGGTCTAT AAACGTAGAGGAATTCTAGATATGGAAAAGGCACTCATGGCTGAGACTGCTGCCAGTGCAGCAGATGAGTTGGTCAGGCTTTTGCGAGTTAATGAGCCTC TGTGGATCAAGTCCCCATCTGATGGAAGATACATTATTGATCGTGTCGGCTATGAGAAACTATACCCCAGGGACAGTCACTTCAAAAGTTCTAATGCTCG TGTCGAATCATCCAAGGATTCAGCAATGGTGATCATGCCTGGAATGGACCTGGTTGACATGTTTTTGGATCCAAATAAATGGATGGATCTTTTTCCGACA ATTGTTACCAAGGCCAGGACAATTCTATTACTTGAAGCTGGAACTGTAGGAAACCGAAATGGTTCCTTGCAGATGATGTATGAACAAATGCACATACTGT CGCCCTTGGTTCCACCTAGGGAGTTTTACTTCCTTCGTCTTTGTCAGCAACTTGAGCCTGGGGAGTGGGTGATAGCAGATATATCGTATGACTTCATGAG AGATGGCTCCCCTTCCCGCGCTTGGCGGCTTCCTTCTGGATGCATGATCCAAGATAAGTCTAATGGATGTTCCAAGGTAACTTGGGTAGAACATGTGGAG GTTGATGATAGAACTCAAACTCATCGCCTTTACAGAGATCTCATATGCGGAAGATCTGCTTATGGAGCAGAACGATGGATTGCTAGTCTCCGGAGGATTT GTGAGAGGTTAGCTTTCTACAAGGAGGAAACTGCAGCTGCTCGAGAATTTGGAGGAGTGATCACTTCACCTGAGGGTAGAAAGAGCATAGTAAACCTAGC CCACAGGATGGTGAAGATCTTTTTTGCAAGTTTGGGCATGTCAGGAAAACTGGATTTCCCTCAACTCTCTGAAGTGCACAATAGTGGGGTTCGGGTGGCT ATTCGTAAGAACACAGAACAAGGGCAGCCGATTGGCATGGTTGTTAGTGCTGCTACTTCTCTCTGGCTTCCACTCTCACCTCAGAATGTGTTTAACTTCT TCAAAGATGAGAAATCACGAATTCAGTGGGATATTCTGTCCAATAGCAATCCTGTGCATGTGATTTCACACATTTCCAATGGGACTAATCCAGGGAACTG CATATCCATTACTCACCAGCCTTTCATTCCTACTGAGAACAACATGCTGATACTTCAAGAGAGCTGCACGGACTCTTCAGGATCAATGGTGGTATATGCT CCACTTGACATTCCAGCCATGAACATGGTGATAGGCGGTGCAGACTCATCGATCATTCCCATACTTCCATCAGGTTTTGTAATATCTGGCGATGGCCGTC CAGACACAGGAGGGGACAGTTCTACTTCCACAAGTTCTACTGGGGCAGACTCAGGAGGTTCACTTCTTACAGTAGCCTTCCAAATTCTGGTCGCTGGCCC TAATGTCACATCCTCCACAGAACTCAACATGGAATCTGTGGCAACAGTCAATACCCTTATCAGCACCACGGTTCTCAAAATTAAGGCTGCTTTGAATTGC TCTAATTTGGGTTAA
AA sequence Show only first row Show all	>Potri.004G074800.3 pacid=42796478 polypeptide=Potri.004G074800.3.p locus=Potri.004G074800 ID=Potri.004G074800.3.v4.1 annot-version=v4.1 MELSMGNNGGASGDEHEAASNSRNQGNKAYHRHSNQQIHQLEKFFKECPHPDENQRRQLSRELGLEAKQIKFWFQNKRTQKKAQSERADNSVLRLENERI QCENLAIIEALKNVICPACGGPPFGEEERQRSLQKLKQENARLKEEHEKVSTLLTKYIGKSISQIDSLTPGAGSSHGVLTTNPGIDLERNPGLDNSQLVY KRRGILDMEKALMAETAASAADELVRLLRVNEPLWIKSPSDGRYIIDRVGYEKLYPRDSHFKSSNARVESSKDSAMVIMPGMDLVDMFLDPNKWMDLFPT IVTKARTILLLEAGTVGNRNGSLQMMYEQMHILSPLVPPREFYFLRLCQQLEPGEWVIADISYDFMRDGSPSRAWRLPSGCMIQDKSNGCSKVTWVEHVE VDDRTQTHRLYRDLICGRSAYGAERWIASLRRICERLAFYKEETAAAREFGGVITSPEGRKSIVNLAHRMVKIFFASLGMSGKLDFPQLSEVHNSGVRVA IRKNTEQGQPIGMVVSAATSLWLPLSPQNVFNFFKDEKSRIQWDILSNSNPVHVISHISNGTNPGNCISITHQPFIPTENNMLILQESCTDSSGSMVVYA PLDIPAMNMVIGGADSSIIPILPSGFVISGDGRPDTGGDSSTSTSSTGADSGGSLLTVAFQILVAGPNVTSSTELNMESVATVNTLISTTVLKIKAALNC SNLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Potri.004G074800 [exp]	0	1
AT5G40270			HD domain-containing metal-dep...		Potri.009G147800 [exp]	1.41	0.9489
					Potri.017G020864 [exp]	3.46	0.9341
AT1G28510			Optic atrophy 3 protein (OPA3)...		Potri.013G123000 [exp]	4.00	0.9373
AT2G37030			SAUR-like auxin-responsive pro...		Potri.016G091500 [exp]	4.47	0.9363
AT1G22970			unknown protein		Potri.010G117100 [exp]	5.74	0.9254
					Potri.004G188432 [exp]	8.48	0.9252
AT3G14610		CYP72A7	"cytochrome P450, family 72, s...		Potri.005G126600 [exp]	9.00	0.9282
AT1G15200			protein-protein interaction re...		Potri.001G208200 [exp]	12.96	0.9112
AT1G50410			SNF2 domain-containing protein...		Potri.014G005701 [exp]	13.41	0.9173
AT5G26594		ARR24	response regulator 24 (.1)		Potri.001G051000 [exp]	14.83	0.8912

Compare expression of checked genes

Potri.004G074800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.