Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65930 781 / 0 cICDH cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) AT1G54340 760 / 0 ICDH isocitrate dehydrogenase (.1) AT5G14590 696 / 0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) AT5G03290 48 / 6e-06 IDH-V isocitrate dehydrogenase V (.1) AT3G09810 47 / 1e-05 IDH-VI isocitrate dehydrogenase VI (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G144541 [exp] 837 / 0 AT1G65930 779 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.010G176000 [exp] 788 / 0 AT1G65930 744 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.008G080500 [exp] 786 / 0 AT1G65930 734 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.001G347800 [exp] 683 / 0 AT5G14590 771 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Potri.006G126700 [exp] 45 / 6e-05 AT5G03290 627 / 0.0 isocitrate dehydrogenase V (.1) Potri.016G091200 [exp] 44 / 0.0001 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010431 [exp] 771 / 0 AT1G54340 747 / 0.0 isocitrate dehydrogenase (.1) Lus10012111 [exp] 770 / 0 AT1G54340 746 / 0.0 isocitrate dehydrogenase (.1) Lus10007380 [exp] 770 / 0 AT1G65930 741 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Lus10020798 [exp] 761 / 0 AT1G65930 744 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Lus10022252 [exp] 626 / 0 AT5G14590 714 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Lus10013090 [exp] 510 / 2e-179 AT5G14590 578 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Lus10026519 [exp] 50 / 2e-06 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10013806 [exp] 47 / 2e-05 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10023192 [exp] 42 / 0.0005 AT5G03290 649 / 0.0 isocitrate dehydrogenase V (.1) Lus10002221 [exp] 42 / 0.0006 AT5G03290 648 / 0.0 isocitrate dehydrogenase V (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0270 [poplar] [flax] Iso_DH PF00180 [poplar] [flax] Iso_dh Isocitrate/isopropylmalate dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.004G074900.1 pacid=42796600 polypeptide=Potri.004G074900.1.p locus=Potri.004G074900 ID=Potri.004G074900.1.v4.1 annot-version=v4.1 ATGGCTTTCGAAAAGATCAAGGTTGCCAACCCCATCGTTGAAATGGACGGAGATGAAATGACCAGAATTTTCTGGCAGTCAATAAAGGATAAGCTTATTT TCCCCTTTGTGGAGTTGGATATCAAGTACTTTGACCTTGGTCTCCCTCACCGTGATGCCACTGATGATAAAGTCACTGTTGAAAGTGCCGAAGCTGCTCT TAAGTACAACGTAGCAATCAAGTGTGCAACTATTACTCCAGATGAAGCTCGTGTCAAGGAGTTTAATTTGAAGCAGATGTGGAAGAGTCCAAATGGAACA ATCAGGAACATTTTGAATGGCACTGTCTTCAGAGAACCAATTATTTGCAAAAACATCCCCCGCCTTGTCCCAGGTTGGACAAAGCCAATTTGCATTGGAA GACATGCTTTTGGTGATCAATATCGAGCAACTGATGCAGTTATCAAAGGAGCTGGCAAGCTCAAGCTGGTGTTTGTACCAGAAGGACAGGATGAGAAGAC TGAGTTGGAGGTTTACAACTTTACAGGTGCTGGTGGGGTGGCATTGGCCATGTATAACACTGATGAGTCCATCCGTGCTTTTGCTGAGGCTTCCATGAAC ACTGCTTACCAGAAGAAGTGGCCACTTTATCTCAGCACAAAAAATACCATTCTGAAGAAGTATGATGGAAGATTCAAGGACATCTTTCAAGAAGTCTACG AGGCCAACTGGAAATCAAAGTATGAGGCCGCAGGAATATGGTATGAACACCGACTCATTGATGATATGGTTGCTTATGCTCTTAAGAGTGAAGGAGGTTA TGTATGGGCATGCAAAAACTATGATGGAGATGTGCAGAGTGATTTCTTGGCCCAAGGTTTCGGATCTCTTGGCTTGATGACCTCTGTATTGGTGTGCCCA GATGGAAAGACTATAGAGGCTGAAGCAGCCCATGGCACAGTTACTCGGCATTACAGGGTTCACCAGAAAGGTGGTGAAACCAGCACAAACAGTATTGCCT CTATTTTTGCTTGGTCAAGAGGACTTGCCCACAGGGCTAAGTTGGATGACAATGCCAGACTCTTGGATTTCACTGAGAAACTAGAGGCAGCCTGTATCGG AGCTGTGGAGTCTGGCAAGATGACCAAGGATCTCGCTCTGCTTATCCATGGATCTAAGGTTAGTAGGGACCATTACCTCAATACCGAGGAGTTCATTGAT GCTGTGGCGGAGGAGCTGAAAGCCAGACTTTCTATCAAGGCATAA
AA sequence Show only first row Show all	>Potri.004G074900.1 pacid=42796600 polypeptide=Potri.004G074900.1.p locus=Potri.004G074900 ID=Potri.004G074900.1.v4.1 annot-version=v4.1 MAFEKIKVANPIVEMDGDEMTRIFWQSIKDKLIFPFVELDIKYFDLGLPHRDATDDKVTVESAEAALKYNVAIKCATITPDEARVKEFNLKQMWKSPNGT IRNILNGTVFREPIICKNIPRLVPGWTKPICIGRHAFGDQYRATDAVIKGAGKLKLVFVPEGQDEKTELEVYNFTGAGGVALAMYNTDESIRAFAEASMN TAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKYEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDDNARLLDFTEKLEAACIGAVESGKMTKDLALLIHGSKVSRDHYLNTEEFID AVAEELKARLSIKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Potri.004G074900 [exp]	0	1
AT3G27000		ATARP2, WRM, AR...	WURM, actin related protein 2 ...		Potri.001G326600 [exp]	2.44	0.9431	Pt-ARP2.1
AT5G11640			Thioredoxin superfamily protei...		Potri.006G237600 [exp]	5.83	0.9427
AT4G35830		ACO1	aconitase 1 (.1.2)		Potri.005G108100 [exp]	8.66	0.9119	Pt-ACO.1
AT2G03200			Eukaryotic aspartyl protease f...		Potri.001G306200 [exp]	9.16	0.9311
AT1G12000			Phosphofructokinase family pro...		Potri.006G281900 [exp]	10.09	0.9326
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.005G079200 [exp]	12.00	0.9206
AT4G24550			Clathrin adaptor complexes med...		Potri.002G105050 [exp]	17.17	0.8977
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Potri.005G108000 [exp]	18.11	0.9206
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Potri.006G136700 [exp]	18.16	0.9201	Pt-SUS1.1
AT3G59480			pfkB-like carbohydrate kinase ...		Potri.017G029000 [exp]	18.33	0.9196

Compare expression of checked genes

Potri.004G074900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.