Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GAD.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17330 904 / 0 GAD1, GAD GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) AT2G02010 867 / 0 GAD4 glutamate decarboxylase 4 (.1) AT1G65960 855 / 0 GAD2 glutamate decarboxylase 2 (.1.2) AT2G02000 847 / 0 GAD3 glutamate decarboxylase 3 (.1) AT3G17760 785 / 0 GAD5 glutamate decarboxylase 5 (.1.2) AT3G17720 254 / 1e-82 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G27980 97 / 3e-21 DPL1, ATDPL1 dihydrosphingosine phosphate lyase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G144421 [exp] 950 / 0 AT5G17330 880 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.004G075300 [exp] 910 / 0 AT5G17330 870 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.008G141100 [exp] 858 / 0 AT2G02010 853 / 0.0 glutamate decarboxylase 4 (.1) Potri.010G100500 [exp] 857 / 0 AT2G02010 879 / 0.0 glutamate decarboxylase 4 (.1) Potri.012G039000 [exp] 818 / 0 AT3G17760 816 / 0.0 glutamate decarboxylase 5 (.1.2) Potri.003G168800 [exp] 103 / 3e-23 AT1G27980 796 / 0.0 dihydrosphingosine phosphate lyase (.1) Potri.002G069800 [exp] 52 / 5e-07 AT1G43710 790 / 0.0 embryo defective 1075, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G190500 [exp] 52 / 6e-07 AT1G43710 811 / 0.0 embryo defective 1075, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019136 [exp] 865 / 0 AT2G02010 883 / 0.0 glutamate decarboxylase 4 (.1) Lus10028530 [exp] 852 / 0 AT5G17330 855 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Lus10035096 [exp] 844 / 0 AT2G02010 835 / 0.0 glutamate decarboxylase 4 (.1) Lus10034425 [exp] 617 / 0 AT5G17330 610 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Lus10031934 [exp] 234 / 1e-75 AT2G02010 229 / 2e-74 glutamate decarboxylase 4 (.1) Lus10009116 [exp] 239 / 7e-72 AT2G02000 248 / 3e-75 glutamate decarboxylase 3 (.1) Lus10034426 [exp] 192 / 4e-59 AT2G02010 227 / 4e-73 glutamate decarboxylase 4 (.1) Lus10003129 [exp] 79 / 2e-15 AT1G27980 781 / 0.0 dihydrosphingosine phosphate lyase (.1) Lus10011345 [exp] 76 / 3e-14 AT1G27980 794 / 0.0 dihydrosphingosine phosphate lyase (.1) Lus10028592 [exp] 51 / 2e-06 AT1G43710 789 / 0.0 embryo defective 1075, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00282 [poplar] [flax] Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain
Representative CDS sequence Show only first row Show all	>Potri.004G075200.1 pacid=42796060 polypeptide=Potri.004G075200.1.p locus=Potri.004G075200 ID=Potri.004G075200.1.v4.1 annot-version=v4.1 ATGGTTCTCTCCAAGACAGCTTCAGAATCTGATGTCTCCGTTCACTCAACGTTTGCCTCTAGATATGTTCGAGCTTCACTTCCCAGGTTCAAGATGCCAG AGAACTCGATCCCGAAGGAGGCAGCCTTTCAGATCATAAACGATGAGCTCATGCTGGATGGAAACCCTAGGCTGAACCTAGCATCGTTTGTGACGACATG GATGGAGCCTGAATGTGACAAGCTTATCATGGCTTCTATCAACAAAAACTACGTCGACATGGATGAATACCCTGTCACCACTGAGCTTCAGAATCGATGC GTTAACATGATAGCCCATCTCTTCAATGCTCCACTTGGAGACTCAGAGACAGCGGTAGGAGTAGGAACTGTTGGATCTTCTGAGGCTATAATGTTGGCTG GTTTGGCATTCAAGAGGAAGTGGCAAAACAAGAGAAAAGCTGAGGGAAAGCCTTACGATAAGCCTAACATTGTCACGGGAGCCAATGTTCAGGTATGTTG GGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTGAAGGAGGTGAAGCTTAGTGATGGCTATTATGTGATGGATCCTGAGAAAGCAGTGCAAATGGTGGAT GAGAACACAATCTGTGTTGCAGCTATTCTTGGTTCCACTCTTAATGGAGAATTTGAAGATGTCAAGCTCTTGAATGATCTCCTGGTGGAGAAGAACAAAT CAACAGGTTGGGATACTCCGATCCATGTCGATGCGGCCAGCGGTGGCTTCATTGCACCTTTTATATACCCGGAGCTCGAGTGGGATTTCCGGTTGCCATT GGTGAAGAGTATCAATGTCAGTGGGCACAAATATGGACTAGTCTATGCTGGTATTGGATGGGTCATTTGGAGGAACAAGGAGGACTTGCCTGAAGAACTT ATCTTCCATATCAATTATCTTGGAGCTGATCAACCAACCTTCACCCTTAACTTCTCCAAAGGATCTAGTCAAGTTATTGCTCAATATTACCAACTCATTC GGTTGGGTTACGAGGGATACAGAAATGTCATGGAAAATTGTAGAGACAACATGCTGGTACTCAAACAAGGACTAGAGAAGACAGGCAAGTTCAACATTGT TTCGAAAGACAATGGGGTGCCACTGGTGGCCTTTTCTTTGAAGGACAATAGCTTGCACAACGAATTTGAGGTGTCCGACATGTTAAGGCGTTTTGGTTGG ATTGTGCCTGCCTACACCATGCCTCCTGATGCTCAACATGTTACTGTGTTGCGCGTCGTAATTCGAGAAGATTTTTCTCGGACACTCGCTGAGCGTCTTG TCATTGACATTGGCAAGGTTCTACATGAGCTTGAGACATTGCCATCCAGGATCAGTGCCAAGATTGTGTTGGCTAATGAAGAGAAGGATGCCGTGGCCGA TAAAGACAAGAAGGACGTCCAGAAAGAAACAAGAGAGATTATTACAGCTTGGAGGAAGCTTGTCATTCAAAGGAAGAAGATGAATGGTGTTTGCTAG
AA sequence Show only first row Show all	>Potri.004G075200.1 pacid=42796060 polypeptide=Potri.004G075200.1.p locus=Potri.004G075200 ID=Potri.004G075200.1.v4.1 annot-version=v4.1 MVLSKTASESDVSVHSTFASRYVRASLPRFKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRC VNMIAHLFNAPLGDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLSDGYYVMDPEKAVQMVD ENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKSTGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEEL IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYRNVMENCRDNMLVLKQGLEKTGKFNIVSKDNGVPLVAFSLKDNSLHNEFEVSDMLRRFGW IVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVIDIGKVLHELETLPSRISAKIVLANEEKDAVADKDKKDVQKETREIITAWRKLVIQRKKMNGVC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Potri.004G075200 [exp]	0	1	Pt-GAD.2
AT4G10810			unknown protein		Potri.014G013600 [exp]	1.41	0.9001
AT2G40435			unknown protein		Potri.016G132600 [exp]	2.44	0.8625
AT5G55650			unknown protein		Potri.001G367100 [exp]	2.82	0.8691
AT3G58850		HLH2, PAR2	phy rapidly regulated 2 (.1)		Potri.002G060100 [exp]	7.93	0.8394
AT5G64667		IDL2	inflorescence deficient in abs...		Potri.005G057400 [exp]	13.03	0.8438
AT1G11915			unknown protein		Potri.011G007900 [exp]	14.45	0.8279
AT2G47500			P-loop nucleoside triphosphate...		Potri.014G125700 [exp]	15.23	0.8551
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Potri.009G031800 [exp]	19.28	0.8271	Pt-EXPA6.1,PtrEXPA5
AT1G07710			Ankyrin repeat family protein ...		Potri.005G069300 [exp]	19.87	0.7808
AT3G62270			HCO3- transporter family (.1)		Potri.008G100300 [exp]	19.89	0.7995

Compare expression of checked genes

Potri.004G075200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.