Plant FIBer expression Database

Potri.004G075600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G22480 758 / 0 ZPR1 zinc-finger domain protein (.1)
AT5G37340 748 / 0 ZPR1 zinc-finger domain protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001350
[exp]
730 / 0 AT5G22480 724 / 0.0 ZPR1 zinc-finger domain protein (.1)
Lus10015454
[exp]
719 / 0 AT5G22480 719 / 0.0 ZPR1 zinc-finger domain protein (.1)
Lus10037351
[exp]
85 / 1e-19 AT5G22480 68 / 2e-14 ZPR1 zinc-finger domain protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0167 Zn_Beta_Ribbon PF03367 zf-ZPR1 ZPR1 zinc-finger domain
Representative CDS sequence
>Potri.004G075600.1 pacid=42796731 polypeptide=Potri.004G075600.1.p locus=Potri.004G075600 ID=Potri.004G075600.1.v4.1 annot-version=v4.1
ATGGAAGGCAGAGATAACAAGGAGCAAATAGTGGACGTGAGATCAGTTGTTGAAGCTATCTCTACAGCAGATAATAATGACATTAATGTCCCTCTTTATG
AAGTTGAAAGTCTCTGTATGCGTTGTCGTGAAAATGGAACCACAAGGTTTTTGTTGACATTAATTCCACATTTTAGAAAGATATTGTTATCTGCCTTTGA
ATGCCCACATTGTGGTGAGAGGAACAATGAAGTTCAGTTTGCCGGTGAAATTCAGCCGCGCGGGTGTTGTTATTCTTTAGATATCCCATCAGGCGATCAA
AAGATTCTTAATCGACAAGTTGTAAAATCTGAGTCTGCCACGATAAAGATTCCTGAATTGGATTTTGAGATTCCTCCAGAGGCACAACGTGGCAGTTTGT
CAACGATTGAAGGGATTTTGGTACGGGCTGCTGATGAATTGCAGGCACTCCAAGAAGAACGCAAGAAAGTGGATCCAAAGACTGCTGAAGCAATAGACCA
GTTCTTGTTGAAATTGAGAGCTTGTGCAGCTGGGGATTCATCATTCAAATTCATCCTGGATGATCCTGCTGGAAACAGCTTCATTGAGAACCTGTTTGCT
CCATCCCCCGATCCATCATTGAATATAAAGTTTTATGAGCGAACACCAGAGCAGCAAGTAGCACTGGGCTATCAAGTTGGCCAATCACAAATGGGAGTAC
CTGGTGATGGACCATCATCAGAAGTGACCAGCAATGTTTCTGATCAGATGCGAAGAGAACCTCATGGATCAGTTGGAGCTGCAGCTGGTCATCGGGCCAT
TGCTCAAAGTAATAGTGCAGAAATTGCTGAAGCCATATTTCGGTACTCTGCACCGGAAGAGGTGATGACTTTCCCATCAACCTGTGGATCTTGTGCCAGC
AGTTGTGAGACTCGAATGTTTGTCACCAATATTCCATACTTCCAAGAAGTAATTGTCATGGCATCTACTTGTGATTCCTGTGGTTACCGAAATTCTGAGT
TGAAGCCTGGCGGTCGAATTCCTGAAAAAGGAAAGACAATCACTTTGTGTGTGAAGAATGCAAATGACCTAAGCCGTGATGTGATAAAGTCAGATACTGC
AGGTGTGAAAGTCCCAGAGCTTGACTTGGAGCTGGCTAGTGGGACTTTGGGTGGCATTGTTACAACTGTTGAAGGTCTGGTCACAAAAATTAGTGAAAGT
ATTGAGAGAATTCATGGATTTACTTTTGGAGATAGCCTTGATGGATCCAAAAAAAGCAAGTGGCAGGACTTTAAATTAAGGTTAAACAAGCTTCTAAATG
TGGAAGAACCTTGGACTTTGATTCTTGATGATGCATTGGCAAATTCTTTTATAGCCCCAGCTACTGACAATATCAAAGATGACCATCAGTTATCATATGA
GGAATACGAGAGGTCCTGGGAACAGAATGAGGAGTTGGGATTGAACGATATTGACACTTCTTCAGCTGATGCTGCCTACGACTCAGCACAGACAACGATA
AAAGAGAAAACGAGAGAGTAA
AA sequence
>Potri.004G075600.1 pacid=42796731 polypeptide=Potri.004G075600.1.p locus=Potri.004G075600 ID=Potri.004G075600.1.v4.1 annot-version=v4.1
MEGRDNKEQIVDVRSVVEAISTADNNDINVPLYEVESLCMRCRENGTTRFLLTLIPHFRKILLSAFECPHCGERNNEVQFAGEIQPRGCCYSLDIPSGDQ
KILNRQVVKSESATIKIPELDFEIPPEAQRGSLSTIEGILVRAADELQALQEERKKVDPKTAEAIDQFLLKLRACAAGDSSFKFILDDPAGNSFIENLFA
PSPDPSLNIKFYERTPEQQVALGYQVGQSQMGVPGDGPSSEVTSNVSDQMRREPHGSVGAAAGHRAIAQSNSAEIAEAIFRYSAPEEVMTFPSTCGSCAS
SCETRMFVTNIPYFQEVIVMASTCDSCGYRNSELKPGGRIPEKGKTITLCVKNANDLSRDVIKSDTAGVKVPELDLELASGTLGGIVTTVEGLVTKISES
IERIHGFTFGDSLDGSKKSKWQDFKLRLNKLLNVEEPWTLILDDALANSFIAPATDNIKDDHQLSYEEYERSWEQNEELGLNDIDTSSADAAYDSAQTTI
KEKTRE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G22480 ZPR1 zinc-finger domain protei... Potri.004G075600
[exp]
0 1
AT4G03320 AtTic20-IV, TIC... translocon at the inner envelo... Potri.019G108800
[exp]
2.44 0.9450
AT5G37670 HSP15.7CI HSP20-like chaperones superfam... Potri.017G130700
[exp]
6.00 0.9494
AT3G23990 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat... Potri.001G054400
[exp]
6.63 0.9371 CPN60.1
AT1G02700 unknown protein Potri.014G124500
[exp]
7.34 0.9462
AT2G29500 HSP20-like chaperones superfam... Potri.001G254700
[exp]
10.58 0.9442
AT5G49220 Protein of unknown function (D... Potri.010G000700
[exp]
13.74 0.9423
AT5G47830 unknown protein Potri.014G024500
[exp]
15.29 0.9408
AT3G08970 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1... Potri.016G120000
[exp]
15.81 0.9438
AT3G09350 Fes1A Fes1A (.1.2.3) Potri.006G088000
[exp]
16.06 0.9435
AT5G53400 BOB1, BOBBER1 BOBBER1, HSP20-like chaperones... Potri.015G013900
[exp]
18.33 0.8800

Potri.004G075600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.