Plant FIBer expression Database

Potri.004G075700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G37370 409 / 3e-141 ATSRL1 PRP38 family protein (.1.2.3.4)
AT2G40650 47 / 1e-05 PRP38 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G144121
[exp]
508 / 1e-179 AT5G37370 408 / 7e-141 PRP38 family protein (.1.2.3.4)
Potri.013G012000
[exp]
50 / 1e-06 AT2G40650 346 / 7e-118 PRP38 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010963
[exp]
451 / 6e-158 AT5G37370 446 / 1e-156 PRP38 family protein (.1.2.3.4)
Lus10031361
[exp]
395 / 4e-136 AT5G37370 394 / 2e-136 PRP38 family protein (.1.2.3.4)
Lus10015203
[exp]
44 / 0.0002 AT5G37370 52 / 3e-07 PRP38 family protein (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03371 PRP38 PRP38 family
Representative CDS sequence
>Potri.004G075700.7 pacid=42793928 polypeptide=Potri.004G075700.7.p locus=Potri.004G075700 ID=Potri.004G075700.7.v4.1 annot-version=v4.1
ATGGAGGTACAGACAAATGGGAAACCGATAGATTCACTCTTTGAGAAGGTCCTTTGTATGAACATTCTATCATCGGATTACTTCAAGGAGCTTTACCGAT
TAAAGACGTACCATGAAGTGATTGATGAAATATACAATCAAGTTGACAATGTTGAGCCATGGATGACTGGTAACTGTCGTGGCCCATCTACGTCCTTTTG
CCTTCTGTACAAGTTCTTCACCATGAAGCTCACTGTCAAACAAATGCATGGTCTGCTAAAGCACAAGGATTCTCCTTATATCAGAGCGGTTGGGTTCCTT
TACCTGAGATATGCTGGTGACCCAAAGACACTGTGGAATTGGTTTGAACCATATATCAAAGATGATGAGGAATTTTCTCCTGGATCTAGTGGAAGGAAGA
CAACAATAGGCATATATGTGCGTGATTTACTTCTCGGACAGTACTACTTTGATACCCTTTTCCCCCGTATTCCTGTTCCTGTCTTGCGGCAGATCACAGC
CAATCTTGAGATGATGAAGCTACCCACAAAAATTTCTGGTTCAACAGGGGATGGCAACCGTCATGGATCTGATGATACTGCACGTCGACCACCATCTGTG
AAGGCTGCACTTTCAGTCTCTTTTGGTCAGCGTGCTCCTCATCGTGCATCAACTAGGGACTCATCTCCTGTTCGTCGCACGCTACCGCCACCCTCCTATG
ACAGAACCAGTGATGATCCACGAAGTCATCGCAGCCAGAGTCGCGAATATTCTGATAAAGAATATTCAGACAGGGATCGGGATCAAGATAGGGGTAGAGA
GAGGGACCGTGATAGGGACAGAGAGAGGGACAGGGTTCGGGATAGAGATCATGATAGAGAAAGAGATCGGGACCGTGGCAGGGACAGTGACAGGAAACAG
GAACGTGAGAGGGGTAGAGACCGAAGGTCTGATTACGATAGGAGTTCCAGGTACACTGACAGGGAGAGCAGAAGGGATTATGAACGGAGCAGCCGTGATG
GAAGTAGGCGTCATAGAGAAAGTAATTATAGAACCCGGAGTCGGAGCAGGAGCAGAAGTAGAAGCCAAAGCTTGCAAGCTGGCACATCACCATTTGATCA
GCATCCAACTCCTCAAAGGGATGGAAGCAAGGATAGGACATCTGCATCTAGCAATCTGGCTAAGCTCAAAGATCTTTATGGTGATCTTGGTGATCAGAAA
GGGGATGCTGGCCTGGAAAGGGGTCCTCGGAGGGACAATGATGGTGAAGAAGTTTTTAGACTGGGTGGTTCTACTTGGAGGTAG
AA sequence
>Potri.004G075700.7 pacid=42793928 polypeptide=Potri.004G075700.7.p locus=Potri.004G075700 ID=Potri.004G075700.7.v4.1 annot-version=v4.1
MEVQTNGKPIDSLFEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDNVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHKDSPYIRAVGFL
YLRYAGDPKTLWNWFEPYIKDDEEFSPGSSGRKTTIGIYVRDLLLGQYYFDTLFPRIPVPVLRQITANLEMMKLPTKISGSTGDGNRHGSDDTARRPPSV
KAALSVSFGQRAPHRASTRDSSPVRRTLPPPSYDRTSDDPRSHRSQSREYSDKEYSDRDRDQDRGRERDRDRDRERDRVRDRDHDRERDRDRGRDSDRKQ
ERERGRDRRSDYDRSSRYTDRESRRDYERSSRDGSRRHRESNYRTRSRSRSRSRSQSLQAGTSPFDQHPTPQRDGSKDRTSASSNLAKLKDLYGDLGDQK
GDAGLERGPRRDNDGEEVFRLGGSTWR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G37370 ATSRL1 PRP38 family protein (.1.2.3.4... Potri.004G075700
[exp]
0 1
AT1G60650 AtRZ-1b AtRZ-1b, RNA-binding (RRM/RBD/... Potri.008G033000
[exp]
2.82 0.7266
AT3G62310 RNA helicase family protein (.... Potri.014G117900
[exp]
3.74 0.7345
AT2G26280 CID7 CTC-interacting domain 7 (.1) Potri.018G047700
[exp]
5.19 0.7273
AT5G65180 ENTH/VHS family protein (.1.2) Potri.005G080600
[exp]
6.24 0.7374
AT2G30530 unknown protein Potri.013G160100
[exp]
8.06 0.7235
AT3G43590 zinc knuckle (CCHC-type) famil... Potri.004G193500
[exp]
8.12 0.7183
AT2G26000 BRIZ2 BRAP2 RING ZnF UBP domain-cont... Potri.007G063900
[exp]
11.00 0.7077
AT3G52660 RNA-binding (RRM/RBD/RNP motif... Potri.006G212400
[exp]
16.30 0.7170
AT2G29210 splicing factor PWI domain-con... Potri.009G036900
[exp]
24.97 0.7161
AT1G11420 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724... Potri.014G117800
[exp]
25.88 0.7094

Potri.004G075700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.