Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65840 728 / 0 ATPAO4 polyamine oxidase 4 (.1) AT3G59050 630 / 0 ATPAO3 polyamine oxidase 3 (.1) AT2G43020 627 / 0 ATPAO2 polyamine oxidase 2 (.1) AT4G16310 228 / 5e-65 LDL3 LSD1-like 3 (.1) AT3G10390 214 / 6e-61 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) AT1G62830 191 / 8e-53 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT3G13682 176 / 5e-48 LDL2 LSD1-like2 (.1) AT4G29720 132 / 3e-33 ATPAO5 polyamine oxidase 5 (.1) AT5G13700 124 / 9e-31 ATPAO1, APAO polyamine oxidase 1 (.1) AT1G57770 45 / 8e-05 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G144001 [exp] 945 / 0 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.002G055300 [exp] 627 / 0 AT2G43020 809 / 0.0 polyamine oxidase 2 (.1) Potri.005G207300 [exp] 620 / 0 AT2G43020 820 / 0.0 polyamine oxidase 2 (.1) Potri.005G235400 [exp] 232 / 2e-66 AT4G16310 1192 / 0.0 LSD1-like 3 (.1) Potri.002G027100 [exp] 228 / 5e-65 AT4G16310 1504 / 0.0 LSD1-like 3 (.1) Potri.008G035200 [exp] 216 / 2e-61 AT3G10390 1152 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.010G227200 [exp] 209 / 5e-59 AT3G10390 1135 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.002G013100 [exp] 196 / 6e-55 AT1G62830 964 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Potri.011G127600 [exp] 187 / 1e-51 AT3G13682 959 / 0.0 LSD1-like2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020726 [exp] 611 / 0 AT2G43020 794 / 0.0 polyamine oxidase 2 (.1) Lus10029804 [exp] 609 / 0 AT2G43020 790 / 0.0 polyamine oxidase 2 (.1) Lus10005021 [exp] 519 / 0 AT2G43020 720 / 0.0 polyamine oxidase 2 (.1) Lus10001044 [exp] 336 / 2e-113 AT2G43020 439 / 2e-154 polyamine oxidase 2 (.1) Lus10033928 [exp] 224 / 1e-63 AT4G16310 1391 / 0.0 LSD1-like 3 (.1) Lus10024311 [exp] 224 / 2e-63 AT4G16310 1471 / 0.0 LSD1-like 3 (.1) Lus10015996 [exp] 198 / 2e-55 AT1G62830 988 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10012283 [exp] 196 / 1e-54 AT1G62830 984 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10017464 [exp] 196 / 2e-54 AT3G10390 1198 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Lus10039599 [exp] 162 / 4e-44 AT5G13700 693 / 0.0 polyamine oxidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13450 [poplar] [flax] NAD_binding_8 NAD(P)-binding Rossmann-like domain
Representative CDS sequence Show only first row Show all	>Potri.004G075800.2 pacid=42795044 polypeptide=Potri.004G075800.2.p locus=Potri.004G075800 ID=Potri.004G075800.2.v4.1 annot-version=v4.1 ATGGAGAATCTGATCGAGAACGGCACTTTCATTTCACAAGTTGAGAGGCCAAACAGTTCGCTTCCTACTGTCATCGTGATTGGTGGTGGTATTTCAGGGC TTGCTGCTGCCCGAAGACTCCATGATGCATCTTTTAAGGTGATCTTGCTGGAATCACGGGATAGACTTGGTGGCCGCATTCATACTGACCATTCATTTGG CTATCCTGTGGATCTGGGAGCATCATGGCTACATGGTGTTTGCAATGAGAATCCTTTGGCGCCGCTGATACGAGGTCTGGGGCTTAAACTATACCGTACT AGTGGAGACAACTCTGTATTATATGACCATGATCTAGAGAGTTACACCCTTTTTGACAAGGAAGGACACAAAATTCCACAACAGATGGTCATCGAAGTTG GAGATGCATTCAAAAGAATTCTTGACGAGACTGAGAAAGTAAGAGATGAACACACAGATGACATGTCTGTTCTTCAAGCGATTTGGATTGTGTTGGATAG GCATCCAGAGTTAAGGCAAGAAGGACTTGCGTATGAAGTCCTGCAATGGTACATCTGTAGAATGGAAGCTTGGTTTGCAGCAGATGCCGATATGATATCA CTGAAATCTTGGGATCAGGAGCAAGTTCTTTCTGGCGGTCATGGTCTTATGGTGCAAGGTTATGACCCTATAATAAAGGCTCTTGCAAAAGATATTGATA TTCGCCTGAATCACAGGGTTGCAAAAATATCCAACGGGCCTAATAAGGTGATGGTCACTGTAGAGGATGGAACAGGCTTTATTGCTGATGCAGCTATCAT TACAGTACCCCTTGGGATTCTTAAAGCAAACTTAATTCATTTTGAGCCAAAGCTGCCACAGTGGAAGGTTGATGCAATTTCAGATCTTGGTTTTGGCAGT GAAAACAAGATTGCAATGCAATTTGATAGAGTATTTTGGCCAGATGTTGAACTATTGGGTGTTGTTGCACCCACATCTTATGCATGTGGTTATTTTCTCA ATCTCCACAAGGCAACTGGCCACCCTGTTCTTGTCTACATGGCTGCCGGAAGGTTTGCTTGTGATCTTGAGAAGCTATCTGATGAGTCTGCTGCAAACTT TGTCATGTTGCAGCTGAAGAAAATGTTTCCAAATGCAACAGAACCGGTTCAATATCTTGTAACAAGGTGGGGAACAGACCCTAACTCACTCGGTTGCTAC TCGTATGATCTAGTTGGAAAGCCTGGAGATTCATATGAGAGACTCCGTGCACCATTGGGCAATCTCTTCTTTGGAGGAGAAGCAGTCAGCATGGAGGACC ATCAAGGATCCGTGCACGGAGCATACTCGGCAGGAATCATGGCTGCCGAGAACTGTCAAGGACACATATTAGAGAGACTTGGCTACTTTGATAAGCTCCA GCTAGTTCCCTCAAGAGGTGAAATCCATGATGCTGCATTTCCCCTCCAAATCTCAAGGATGTGA
AA sequence Show only first row Show all	>Potri.004G075800.2 pacid=42795044 polypeptide=Potri.004G075800.2.p locus=Potri.004G075800 ID=Potri.004G075800.2.v4.1 annot-version=v4.1 MENLIENGTFISQVERPNSSLPTVIVIGGGISGLAAARRLHDASFKVILLESRDRLGGRIHTDHSFGYPVDLGASWLHGVCNENPLAPLIRGLGLKLYRT SGDNSVLYDHDLESYTLFDKEGHKIPQQMVIEVGDAFKRILDETEKVRDEHTDDMSVLQAIWIVLDRHPELRQEGLAYEVLQWYICRMEAWFAADADMIS LKSWDQEQVLSGGHGLMVQGYDPIIKALAKDIDIRLNHRVAKISNGPNKVMVTVEDGTGFIADAAIITVPLGILKANLIHFEPKLPQWKVDAISDLGFGS ENKIAMQFDRVFWPDVELLGVVAPTSYACGYFLNLHKATGHPVLVYMAAGRFACDLEKLSDESAANFVMLQLKKMFPNATEPVQYLVTRWGTDPNSLGCY SYDLVGKPGDSYERLRAPLGNLFFGGEAVSMEDHQGSVHGAYSAGIMAAENCQGHILERLGYFDKLQLVPSRGEIHDAAFPLQISRM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65840		ATPAO4	polyamine oxidase 4 (.1)		Potri.004G075800 [exp]	0	1
AT1G08440			Aluminium activated malate tra...		Potri.009G017900 [exp]	4.12	0.7267
AT2G34930			disease resistance family prot...		Potri.015G025800 [exp]	4.47	0.6528
AT2G32070			Polynucleotidyl transferase, r...		Potri.018G020900 [exp]	5.00	0.6796
AT2G18420			Gibberellin-regulated family p...		Potri.002G022500 [exp]	6.92	0.6673
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Potri.010G000800 [exp]	8.12	0.7082
AT1G14130			2-oxoglutarate (2OG) and Fe(II...		Potri.001G455400 [exp]	11.61	0.6314	Pt-ARRO.2,2OGox14
AT5G18470			Curculin-like (mannose-binding...		Potri.005G015300 [exp]	15.09	0.7054
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014338 [exp]	16.73	0.6915
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Potri.008G101500 [exp]	17.14	0.6640
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Potri.002G160500 [exp]	22.60	0.5613

Compare expression of checked genes

Potri.004G075800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.