Plant FIBer expression Database

Potri.004G075900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G02720 562 / 0 Class I glutamine amidotransferase-like superfamily protein (.1)
AT2G38860 280 / 2e-91 YLS5 Class I glutamine amidotransferase-like superfamily protein (.1.2.3)
AT3G54600 269 / 3e-87 Class I glutamine amidotransferase-like superfamily protein (.1)
AT1G53280 48 / 6e-06 AtDJ1B DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G076000
[exp]
732 / 0 AT3G02720 608 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1)
Potri.004G076200
[exp]
728 / 0 AT3G02720 603 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1)
Potri.017G143940
[exp]
677 / 0 AT3G02720 609 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1)
Potri.017G143880
[exp]
636 / 0 AT3G02720 650 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1)
Potri.011G111900
[exp]
48 / 6e-06 AT1G53280 581 / 0.0 DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010964
[exp]
573 / 0 AT3G02720 635 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1)
Lus10031360
[exp]
566 / 0 AT3G02720 624 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1)
Lus10014721
[exp]
315 / 4e-105 AT2G38860 490 / 2e-173 Class I glutamine amidotransferase-like superfamily protein (.1.2.3)
Lus10003083
[exp]
132 / 6e-37 ND 173 / 2e-52
Lus10003084
[exp]
112 / 8e-27 AT2G38840 650 / 0.0 Guanylate-binding family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0014 Glutaminase_I PF01965 DJ-1_PfpI DJ-1/PfpI family
Representative CDS sequence
>Potri.004G075900.2 pacid=42793857 polypeptide=Potri.004G075875.1.p locus=Potri.004G075900 ID=Potri.004G075900.2.v4.1 annot-version=v4.1
ATGGCTAATTGCAAGCCACGGAAGAAAGTTCTATTGTTATGTGGGGATTACATGGAAGATTATGAGGCTATGGTTCCATTTCAAGCCTTGCAGGCTTATG
GAATAGCAGTTGATGCTGTTTGTCCTGGAAAGAAAGCTGGTGATTATTGCCGCACTACAGTTGGGGACTCTGGTGCCTATCATGGATATCAGACTTATAC
TGAGAAGCCTGGGCACAACTTTAGTCTCAATGCAACTTTCGATGAAGTTGATTTCAGCAAATATGATGCGCTTGTTATACCAGGAGGAAGGGCTCCAGAA
TATCTTGCCATGAATGAATCTGTGCTTATTAAAGGCCGGAAGTGCACTGCATACCGTGCTCTGGGACCTGTTCTCATCGATGCCGGTGCTCTTTGGATTG
AACCCAAAACCATGATGGATTGTGTTTCTGATGGCAATCTCATTACTGGAGTTATATATAAGGCGCATCCTGAGTACATCCAGCTTGTTGTGAAGGCACT
GGGAGGCAAGATAGCTGGTTCAGATAAAAGGATTCTGTTTCTCTGTGGGGATTTCATGGAAGATTATGAGGTTACTGTTCCTCTTCAATCTCTTCAAGCT
CTTGGGTGCCACGTTGATGCAGTTTGCCCCAAGAAGAAGGCTGGGGATTTCTGCCCGACTGCAGTCCATGACTTTGAAGGTGACCAAACATACACTGAGA
AGCCAGGCCATAATTTCATTCTAACAGCTTCCTATGAAGGCTTGGATGCCTCGAGTTACGACGCTCTCGTCATCCCTGGAGGCCGGTCTCCAGAATATTT
GGCACTGGATGAGACAGTGATTGCCTTGGTGAAGAAATTCATGCAATCAAAGAAGCCAGTTGCCTCTATTTGTCACGGGCAGCAGATCCTAGCTGCTGCG
GGAGTTCTCAAGGGAAGAAAGTGCACCGCATACCCTGCTGTGAAGCTGAACGTCGTCTTGGGAGGGGCAACATGGCTAGAACCGGATCCAATCGATCGTT
GCTACACCGACGAAAACCTGGTTACCGGAGCTGCATGGCCAGGGCACCCTCAGTTTGTGTCTCAGCTGATGGCCTTACTTGGTATCCGAGTGTCATTCTA
G
AA sequence
>Potri.004G075900.2 pacid=42793857 polypeptide=Potri.004G075875.1.p locus=Potri.004G075900 ID=Potri.004G075900.2.v4.1 annot-version=v4.1
MANCKPRKKVLLLCGDYMEDYEAMVPFQALQAYGIAVDAVCPGKKAGDYCRTTVGDSGAYHGYQTYTEKPGHNFSLNATFDEVDFSKYDALVIPGGRAPE
YLAMNESVLIKGRKCTAYRALGPVLIDAGALWIEPKTMMDCVSDGNLITGVIYKAHPEYIQLVVKALGGKIAGSDKRILFLCGDFMEDYEVTVPLQSLQA
LGCHVDAVCPKKKAGDFCPTAVHDFEGDQTYTEKPGHNFILTASYEGLDASSYDALVIPGGRSPEYLALDETVIALVKKFMQSKKPVASICHGQQILAAA
GVLKGRKCTAYPAVKLNVVLGGATWLEPDPIDRCYTDENLVTGAAWPGHPQFVSQLMALLGIRVSF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G02720 Class I glutamine amidotransfe... Potri.004G075900
[exp]
0 1
AT3G02720 Class I glutamine amidotransfe... Potri.004G076000
[exp]
1.00 0.9949
AT3G02720 Class I glutamine amidotransfe... Potri.004G076200
[exp]
1.41 0.9775
AT5G45960 GDSL-like Lipase/Acylhydrolase... Potri.011G061900
[exp]
2.44 0.9442
AT2G14960 GH3.1 Auxin-responsive GH3 family pr... Potri.007G050300
[exp]
3.16 0.9111 GH3-1
AT2G30130 AS2 PCK1, LBD12, AS... PEACOCK 1, Lateral organ bound... Potri.009G076900
[exp]
5.65 0.9152
AT1G53708 RTFL9 ROTUNDIFOLIA like 9 (.1) Potri.001G161200
[exp]
8.48 0.9075
AT1G29520 AWPM-19-like family protein (.... Potri.001G354500
[exp]
10.81 0.9036
AT1G03430 AHP5 histidine-containing phosphotr... Potri.014G136200
[exp]
11.31 0.8873 Pt-HPT2.1
AT3G51680 AtSDR2 short-chain dehydrogenase/redu... Potri.016G073900
[exp]
12.96 0.9050 CTS2.13
Potri.001G290300
[exp]
14.49 0.8916

Potri.004G075900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.