Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38260 401 / 1e-131 Protein kinase superfamily protein (.1) AT1G66910 384 / 1e-124 Protein kinase superfamily protein (.1) AT1G67000 365 / 4e-115 Protein kinase superfamily protein (.1) AT1G66930 351 / 5e-112 Protein kinase superfamily protein (.1) AT5G38280 342 / 2e-108 PR5K PR5-like receptor kinase (.1) AT1G66920 332 / 2e-105 Protein kinase superfamily protein (.1.2) AT1G70250 336 / 6e-105 receptor serine/threonine kinase, putative (.1) AT4G18250 337 / 1e-104 receptor serine/threonine kinase, putative (.1) AT5G39020 330 / 2e-102 Malectin/receptor-like protein kinase family protein (.1) AT1G66980 332 / 1e-100 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G076500 [exp] 1147 / 0 AT5G38260 409 / 1e-134 Protein kinase superfamily protein (.1) Potri.010G120950 [exp] 910 / 0 AT5G38260 371 / 3e-120 Protein kinase superfamily protein (.1) Potri.010G121350 [exp] 556 / 0 AT5G38260 364 / 5e-118 Protein kinase superfamily protein (.1) Potri.015G045200 [exp] 526 / 2e-180 AT5G38260 403 / 1e-132 Protein kinase superfamily protein (.1) Potri.010G120800 [exp] 498 / 6e-168 AT1G18390 525 / 2e-178 Protein kinase superfamily protein (.1.2) Potri.017G116900 [exp] 474 / 1e-159 AT1G66910 477 / 2e-160 Protein kinase superfamily protein (.1) Potri.015G044875 [exp] 454 / 4e-153 AT5G38260 360 / 8e-117 Protein kinase superfamily protein (.1) Potri.017G117120 [exp] 440 / 2e-146 AT5G38260 430 / 2e-142 Protein kinase superfamily protein (.1) Potri.017G117010 [exp] 439 / 6e-146 AT5G38260 398 / 3e-130 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014923 [exp] 370 / 3e-120 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10025553 [exp] 348 / 6e-111 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10014924 [exp] 337 / 1e-106 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10025492 [exp] 329 / 2e-103 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10025547 [exp] 306 / 1e-95 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10025545 [exp] 297 / 2e-95 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10026761 [exp] 301 / 1e-94 AT1G67000 334 / 4e-107 Protein kinase superfamily protein (.1) Lus10022359 [exp] 303 / 2e-94 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008335 [exp] 300 / 7e-92 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10027085 [exp] 250 / 6e-78 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding CL0016 [poplar] [flax] PF14380 [poplar] [flax] WAK_assoc Wall-associated receptor kinase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.004G076100.2 pacid=42795766 polypeptide=Potri.004G076100.2.p locus=Potri.004G076100 ID=Potri.004G076100.2.v4.1 annot-version=v4.1 ATGAACCATAACTTCTTTTTAACATCCTTTTCTTCAATAATAAGTCTCTTTGTTGTCTCTTTGTTCCTCCTGGAAAAGAAAGCCTCATGTACAGACCCTC AGTTCCTAGCTTGCAATCCCGAAAGCTGTGGCGATGGCCAAAACATAAACTTCCCATTTTACATCCAGAACAAGCAAGAACCCTCCTGTGGCTACCCTGG ATTCAGTCTCTCTTGCAATAACAAAGGCAAGCCAGTCCTTAAACTGTCCAATAATGAGTATATCATCCACGAAATCTACTACCAAAACCAGTCTCTTCGT GTCTCAAATGCAGCTTTTTTTGGGAAAAGCACCCCCTGTATTCCTCAAATACAAAACATGTCTCTAGCTGATGACAGGTTCCGTCTACCTTCTAACAGAG CAAGCCTCTTCTTGCTTTACAATTGCAACTCAACACTGCTAGCAAATGATAGTAAACTTCTGAATTACAAGGTTGATTGTTTTGGAGAGAATGGAACTGT TTCAACTCTAGCAATGCTTGATGATGATCCTCTGTTGGGTCCTGCATCGGACAAGTGTGAAACTGGAGCTGTGGCACCTGTGGATGTGTATAGAGGAGAG AATGTTGGGAGTGAAAGGATGCTATTGTTAGAAAGAGGGTTTGTGTTGAATTGGATAGCAAGTAATTGTAGCATCTGTGAAGAGAGTGGTGGCAAGTGTG GATTTGATAACGCCACATACCATTTCAAATGTTTCTGTCCTGATAGACCTCATTCTCGGGCTTGTACTTCCGGGAATGGCAATATGGGACGAAAGCTTAT AATAGCTGCCTCAGCTGCCGGCGTTGGAGTTCTAATAATTACAATCTGCTGCGTCATCATCAGAAAGTTCTCACCCGTCAACTTCCTTTCCAGTTTGAGA AAAACCAGAGGAAGTCGAAGTATAGAGGTTTTTCTGAGGAACTATGGAACCTTGGCACCAAAAAGATACAGTTATTCAGAACTTAAGAAAATGACCAAAA CCTTCAAAGAGAAACTAGGCCAAGGAGGCTACGGAAGTGTTTTCAAAGGCAATTTACCTGATGGTCGTCTTGTTGCTGTTAAAGTCTTGAAGAAAGCAAA GAGTAACGGAGAAGAATTTGTCAACGAAGTTTCAAGCATCAGCCAGACTTCCCACGTCAACATTGTTACTCTTCTGGGGTTCTGTTTTGCGGGTTCCAAA CGAGCTCTAATCTACGAGTTCATGTCTAATGGGTCACTTGACAAGCACATATATGAAGAAAATCTCTCGAAGGCAGATCGCCAATTGGGGTGGGAAACAC TGTACCAAATTGCAGTTGGCATTGCTCGGGGATTAGAATACTTGCACAGACGTTGCAACACAAGGATTTTACATTTCGACATCAAGCCTAATAATATTCT TCTAGATGAAAACTTCTGTCCTAAAATTTCTGATTTCGGCCTAGCTAAAATATGTCCCAGAAAAGAGAGTATCGTATCGATGACGGGTGCAAGAGGAACT ATTGGATACATTGCCCCCGAAGTATTTTGTCGAAATTTTGGAGAGGTCTCTCACAAATCTGATGTTTATAGCTACGAGATGCTAGTATTAGAAATGATTG GAGGGAGAAAAAACTTCTGCGTCGGAGCTGGTAATACCAGTGAGATCTATTTTCCATATTTGATATACAAGCGTCTTGAACTAGGCGAAGAACTTGGACT TCGAGGGACGGGCAATAAAGTGGAAGAGCAAATTGCAAGAAAAATGATTTCGGCAAGCTTGTGGTGCATACAAACTGATCCCTCAAATCGGCCACCCATG TCTCGAGTGGTAGAAATGCTGCAAGGAAGCCTCGAGTCCTTGCCAATCCCACCGAGACCGATCTTGTCTTCCCCTCCAAGATCTCCTCGTGGATCAATTT CAGATTTCTCGAGCACCGCTATCATAATCCATGACCTTTAA
AA sequence Show only first row Show all	>Potri.004G076100.2 pacid=42795766 polypeptide=Potri.004G076100.2.p locus=Potri.004G076100 ID=Potri.004G076100.2.v4.1 annot-version=v4.1 MNHNFFLTSFSSIISLFVVSLFLLEKKASCTDPQFLACNPESCGDGQNINFPFYIQNKQEPSCGYPGFSLSCNNKGKPVLKLSNNEYIIHEIYYQNQSLR VSNAAFFGKSTPCIPQIQNMSLADDRFRLPSNRASLFLLYNCNSTLLANDSKLLNYKVDCFGENGTVSTLAMLDDDPLLGPASDKCETGAVAPVDVYRGE NVGSERMLLLERGFVLNWIASNCSICEESGGKCGFDNATYHFKCFCPDRPHSRACTSGNGNMGRKLIIAASAAGVGVLIITICCVIIRKFSPVNFLSSLR KTRGSRSIEVFLRNYGTLAPKRYSYSELKKMTKTFKEKLGQGGYGSVFKGNLPDGRLVAVKVLKKAKSNGEEFVNEVSSISQTSHVNIVTLLGFCFAGSK RALIYEFMSNGSLDKHIYEENLSKADRQLGWETLYQIAVGIARGLEYLHRRCNTRILHFDIKPNNILLDENFCPKISDFGLAKICPRKESIVSMTGARGT IGYIAPEVFCRNFGEVSHKSDVYSYEMLVLEMIGGRKNFCVGAGNTSEIYFPYLIYKRLELGEELGLRGTGNKVEEQIARKMISASLWCIQTDPSNRPPM SRVVEMLQGSLESLPIPPRPILSSPPRSPRGSISDFSSTAIIIHDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38260			Protein kinase superfamily pro...		Potri.004G076100 [exp]	0	1
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Potri.002G077600 [exp]	5.19	0.9033
AT5G38260			Protein kinase superfamily pro...		Potri.004G076500 [exp]	9.05	0.7966
AT2G44920			Tetratricopeptide repeat (TPR)...		Potri.010G200000 [exp]	12.72	0.8809
AT4G26555			FKBP-like peptidyl-prolyl cis-...		Potri.001G467100 [exp]	15.49	0.8598
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Potri.017G072800 [exp]	18.65	0.8735
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Potri.001G421300 [exp]	20.49	0.8386
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Potri.002G186300 [exp]	28.91	0.8681
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.006G258550 [exp]	31.85	0.8542
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Potri.018G031800 [exp]	32.00	0.7807
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Potri.007G134600 [exp]	35.24	0.8442

Compare expression of checked genes

Potri.004G076100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.